Aliases for RNU6-1243P Gene

Aliases for RNU6-1243P Gene

  • RNA, U6 Small Nuclear 1243, Pseudogene 2 3 5

External Ids for RNU6-1243P Gene

Previous GeneCards Identifiers for RNU6-1243P Gene

  • GC11P061707
  • GC00U935908

Summaries for RNU6-1243P Gene

GeneCards Summary for RNU6-1243P Gene

RNU6-1243P (RNA, U6 Small Nuclear 1243, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1243P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1243P Gene

Genomics for RNU6-1243P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1243P Gene

Promoters and enhancers for RNU6-1243P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J061916 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -17.1 -17134 10.3 RBPJ SMARCE1 POLR2A NR2F6 RUNX1 CC2D1A L3MBTL2 DACH1 MNT TEAD4 RAB3IL1 GANAB NXF1 CPSF7 CSKMT TMEM179B TMEM138 INTS5 UBXN1 SNHG1
GH11J061908 Enhancer 0.8 ENCODE CraniofacialAtlas dbSUPER 0.3 -28.8 -28760 1.3 ZNF148 MAFK DPF2 ZNF316 ZKSCAN1 EMSY piR-47158 BEST1 FADS1 INCENP RF00026-184 RNU6-1243P RAB3IL1
GH11J061910 Enhancer 0.7 ENCODE dbSUPER 0.3 -26.6 -26635 2.5 ZNF692 SCRT2 NR2F2 BCOR CTCF ZMYM3 ZBTB33 POLR2A KDM1A NFXL1 BEST1 RAB3IL1 FADS1 FTH1 FADS2 piR-47158 RF00026-184 RNU6-1243P
GH11J061912 Enhancer 0.7 ENCODE dbSUPER 0.3 -25.2 -25170 0.2 MYC MAX ZBTB33 SCRT2 BCOR CTCF ZMYM3 POLR2A KDM1A NFXL1 FADS3 RAB3IL1 BEST1 piR-47158 RF00026-184 RNU6-1243P
GH11J061926 Enhancer 0.4 Ensembl 0.4 -10.1 -10112 2.4 PRDM10 CEBPB CEBPG GLIS1 FADS3 FADS1 FTH1 RAB3IL1 TMEM138 RF00026-184 RNU6-1243P piR-47158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1243P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1243P Gene

Genomic Locations for RNU6-1243P Gene
chr11:61,937,894-61,938,000
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1243P Gene

Genes around RNU6-1243P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1243P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1243P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1243P Gene

Proteins for RNU6-1243P Gene

Post-translational modifications for RNU6-1243P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1243P Gene

Domains & Families for RNU6-1243P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1243P Gene

Function for RNU6-1243P Gene

Phenotypes From GWAS Catalog for RNU6-1243P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1243P Gene

Localization for RNU6-1243P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1243P Gene

Pathways & Interactions for RNU6-1243P Gene

PathCards logo

SuperPathways for RNU6-1243P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1243P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1243P Gene

Drugs & Compounds for RNU6-1243P Gene

No Compound Related Data Available

Transcripts for RNU6-1243P Gene

mRNA/cDNA for RNU6-1243P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1243P Gene

No ASD Table

Relevant External Links for RNU6-1243P Gene

GeneLoc Exon Structure for
RNU6-1243P
ECgene alternative splicing isoforms for
RNU6-1243P

Expression for RNU6-1243P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1243P Gene

Orthologs for RNU6-1243P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1243P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 33
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24042 33
  • 81 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 33
  • 81 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 33
  • 74 (a)
ManyToMany
Species where no ortholog for RNU6-1243P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1243P Gene

ENSEMBL:
Gene Tree for RNU6-1243P (if available)
TreeFam:
Gene Tree for RNU6-1243P (if available)

Paralogs for RNU6-1243P Gene

No data available for Paralogs for RNU6-1243P Gene

Variants for RNU6-1243P Gene

Additional Variant Information for RNU6-1243P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1243P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1243P Gene

Disorders for RNU6-1243P Gene

No disorders were found for RNU6-1243P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1243P Gene

Publications for RNU6-1243P Gene

No publications were found for RNU6-1243P Gene.

No data available for External Links for RNU6-1243P Gene

Products for RNU6-1243P Gene

Sources for RNU6-1243P Gene