Aliases for RNU6-123P Gene

Aliases for RNU6-123P Gene

  • RNA, U6 Small Nuclear 123, Pseudogene 2 3 5

External Ids for RNU6-123P Gene

Previous GeneCards Identifiers for RNU6-123P Gene

  • GC21M027317
  • GC00U935226

Summaries for RNU6-123P Gene

GeneCards Summary for RNU6-123P Gene

RNU6-123P (RNA, U6 Small Nuclear 123, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-123P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-123P Gene

Genomics for RNU6-123P Gene

GeneHancer (GH) Regulatory Elements for RNU6-123P Gene

Promoters and enhancers for RNU6-123P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J025943 Enhancer 0.6 Ensembl dbSUPER 500.7 -1.0 -956 0.2 NCOR1 NR2F2 HNF4A NR2F6 RXRA RF00026-660 RNU6-123P RNU6-926P ENSG00000233783 piR-57460-423 APP lnc-JAM2-1
GH21J025942 Enhancer 0.5 Ensembl ENCODE dbSUPER 500.7 +0.4 444 1 RF00026-660 RNU6-123P ENSG00000233783 APP lnc-JAM2-1
GH21J025962 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 12.3 -20.7 -20667 2.7 JUND NR2F2 FOS SPI1 STAT3 STAT1 GATA2 MAX JUN ESR1 piR-32214-422 piR-57460-423 ENSG00000233783 RNU6-123P APP RF00026-660 lnc-JAM2-1
GH21J025979 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 11.9 -37.7 -37691 1.8 ZNF300 FOS FOXA1 FEZF1 MYC STAT3 GABPA RNU6-123P ENSG00000233783 ENSG00000224541 APP lnc-GABPA-12 piR-32214-422 lnc-JAM2-1
GH21J025983 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.4 -42.7 -42656 5.2 MXI1 NR2F2 FOS RCOR1 RAD21 GATA2 MAX POLR2A RXRA SP1 RNU6-123P ENSG00000233783 ENSG00000224541 lnc-GABPA-12 piR-32214-422 APP lnc-JAM2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-123P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-123P Gene

Genomic Locations for RNU6-123P Gene
chr21:25,943,044-25,943,145
(GRCh38/hg38)
Size:
102 bases
Orientation:
Minus strand

Genomic View for RNU6-123P Gene

Genes around RNU6-123P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-123P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-123P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-123P Gene

Proteins for RNU6-123P Gene

Post-translational modifications for RNU6-123P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-123P Gene

Domains & Families for RNU6-123P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-123P Gene

Function for RNU6-123P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-123P Gene

Localization for RNU6-123P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-123P Gene

Pathways & Interactions for RNU6-123P Gene

PathCards logo

SuperPathways for RNU6-123P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-123P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-123P Gene

Drugs & Compounds for RNU6-123P Gene

No Compound Related Data Available

Transcripts for RNU6-123P Gene

mRNA/cDNA for RNU6-123P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-123P Gene

No ASD Table

Relevant External Links for RNU6-123P Gene

GeneLoc Exon Structure for
RNU6-123P

Expression for RNU6-123P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-123P Gene

genes like me logo Genes that share expression patterns with RNU6-123P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-123P Gene

Orthologs for RNU6-123P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-123P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 31
  • 78 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 31
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26101 31
  • 68 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 64 (a)
ManyToMany
Species where no ortholog for RNU6-123P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-123P Gene

ENSEMBL:
Gene Tree for RNU6-123P (if available)
TreeFam:
Gene Tree for RNU6-123P (if available)

Paralogs for RNU6-123P Gene

No data available for Paralogs for RNU6-123P Gene

Variants for RNU6-123P Gene

Additional Variant Information for RNU6-123P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-123P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-123P Gene

Disorders for RNU6-123P Gene

No disorders were found for RNU6-123P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-123P Gene

Publications for RNU6-123P Gene

No publications were found for RNU6-123P Gene.

No data available for Mastermind for RNU6-123P Gene

Products for RNU6-123P Gene

Sources for RNU6-123P Gene