Aliases for RNU6-1238P Gene

Aliases for RNU6-1238P Gene

  • RNA, U6 Small Nuclear 1238, Pseudogene 2 3 5
  • RNU6-1238P 5

External Ids for RNU6-1238P Gene

Previous GeneCards Identifiers for RNU6-1238P Gene

  • GC11M067164
  • GC00U935964
  • GC11M067396

Summaries for RNU6-1238P Gene

GeneCards Summary for RNU6-1238P Gene

RNU6-1238P (RNA, U6 Small Nuclear 1238, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1238P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1238P Gene

Genomics for RNU6-1238P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1238P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J067396 Enhancer 0.6 ENCODE 250.7 -1.7 -1736 1.8 POLR2A MAFF ZNF316 RBM22 MAFK MAFG RFX1 ZNF24 BMI1 PML RF00017-865 RNU6-1238P SSH3 PTPRCAP C11orf80 MN309273 TBC1D10C CLCF1 RAD9A
GH11J067316 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 11.7 +77.5 77510 2.8 BCLAF1 SP1 MYC ZNF600 ZNF654 IKZF1 SIX5 SSRP1 ZNF592 KLF9 RAD9A ENSG00000287851 HSALNG0085126 LOC100130987 RBM14 KMT5B RBM4 RCE1 KDM2A TBC1D10C
GH11J067347 Enhancer 1.1 ENCODE dbSUPER 11.7 +46.3 46251 2.3 MYC IKZF1 NCOR1 NFIC NONO HES1 BHLHE40 MBD2 MNT ARNT ENSG00000256514 CLCF1 RAD9A RNU6-1238P TBC1D10C SSH3 CARNS1 ANKRD13D PPP1CA ENSG00000274251
GH11J067344 Enhancer 1 ENCODE dbSUPER 11.3 +49.5 49525 3 ZNF654 CEBPA NONO TRIM22 CTCF ZNF217 MBD2 ELF1 FOXA2 CTBP1 HSALNG0085128 CLCF1 ENSG00000256514 SSH3 ANKRD13D RAD9A PPP1CA RNU6-1238P TBC1D10C CARNS1
GH11J067333 Enhancer 0.2 Ensembl 11.4 +61.8 61810 0.2 POLD4 RN7SKP239 CLCF1 ENSG00000256514 SSH3 ANKRD13D RNU6-1238P TBC1D10C CARNS1 PPP1CA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1238P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1238P Gene

Latest Assembly
chr11:67,395,210-67,395,311
(GRCh38/hg38)
Size:
102 bases
Orientation:
Minus strand

Previous Assembly
chr11:67,162,681-67,162,782
(GRCh37/hg19 by Entrez Gene)
Size:
102 bases
Orientation:
Minus strand

chr11:67,162,681-67,162,782
(GRCh37/hg19 by Ensembl)
Size:
102 bases
Orientation:
Minus strand

Genomic View for RNU6-1238P Gene

Genes around RNU6-1238P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1238P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1238P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1238P Gene

Proteins for RNU6-1238P Gene

Post-translational modifications for RNU6-1238P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1238P Gene

Domains & Families for RNU6-1238P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1238P Gene

Function for RNU6-1238P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1238P Gene

Localization for RNU6-1238P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1238P Gene

Pathways & Interactions for RNU6-1238P Gene

PathCards logo

SuperPathways for RNU6-1238P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1238P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1238P Gene

Drugs & Compounds for RNU6-1238P Gene

No Compound Related Data Available

Transcripts for RNU6-1238P Gene

mRNA/cDNA for RNU6-1238P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1238P Gene

No ASD Table

Relevant External Links for RNU6-1238P Gene

GeneLoc Exon Structure for
RNU6-1238P

Expression for RNU6-1238P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1238P Gene

genes like me logo Genes that share expression patterns with RNU6-1238P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1238P Gene

Orthologs for RNU6-1238P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1238P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 30
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U6 30
  • 62 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U6 30
  • 60 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 30
  • 54 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U6 30
  • 53 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm22208 30
  • 49 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U6 30
  • 72 (a)
ManyToMany
Species where no ortholog for RNU6-1238P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU6-1238P Gene

ENSEMBL:
Gene Tree for RNU6-1238P (if available)
TreeFam:
Gene Tree for RNU6-1238P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU6-1238P

Paralogs for RNU6-1238P Gene

No data available for Paralogs for RNU6-1238P Gene

Variants for RNU6-1238P Gene

Additional Variant Information for RNU6-1238P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1238P
Leiden Open Variation Database (LOVD)
RNU6-1238P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1238P Gene

Disorders for RNU6-1238P Gene

No disorders were found for RNU6-1238P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1238P Gene

Publications for RNU6-1238P Gene

No publications were found for RNU6-1238P Gene.

Products for RNU6-1238P Gene

Sources for RNU6-1238P Gene