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Aliases for RNU6-1231P Gene

Aliases for RNU6-1231P Gene

  • RNA, U6 Small Nuclear 1231, Pseudogene 2 3 5

External Ids for RNU6-1231P Gene

Previous GeneCards Identifiers for RNU6-1231P Gene

  • GC10P104565
  • GC00U935471

Summaries for RNU6-1231P Gene

GeneCards Summary for RNU6-1231P Gene

RNU6-1231P (RNA, U6 Small Nuclear 1231, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1231P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1231P Gene

Genomics for RNU6-1231P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1231P Gene

Promoters and enhancers for RNU6-1231P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I102804 Enhancer 0.4 Ensembl dbSUPER 550.8 +1.0 972 0.2 RNU6-1231P CYP17A1-AS1 WBP1L
GH10I102798 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.2 -2156 5.7 USF1 ZNF449 JUN MAX EBF1 RAD21 RELA POLR2A FOS ETV6 NFKB2 BORCS7 AS3MT WBP1L SFXN2 NT5C2 MFSD13A RNU6-1231P GC10P102745 GC10P102744
GH10I102772 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.2 -25243 11.8 PKNOX1 FOXA2 SIN3A YY1 ZNF121 GLIS2 FOS RUNX3 RXRA REST WBP1L SFXN2 AS3MT ARL3 PPRC1 NFKB2 LDB1 PDCD11 BORCS7 CYP17A1
GH10I102794 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.6 -7628 3.4 FOXA2 TAF1 MAX EBF1 RAD21 YY1 ZNF316 POLR2A NFATC1 RUNX3 BORCS7 SFXN2 AS3MT NFKB2 NT5C2 C10orf95 RNU6-1231P GC10P102744 GC10P102745 WBP1L
GH10I102811 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +10.9 10898 6.3 PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF48 YY1 TCF12 SLC30A9 AS3MT CYP17A1 PFN1P11 PTGES3P4 SFXN2 ARL3 CNNM2 WBP1L BORCS7 C10orf95
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1231P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1231P Gene

Genomic Locations for RNU6-1231P Gene
chr10:102,803,929-102,804,031
(GRCh38/hg38)
Size:
103 bases
Orientation:
Plus strand

Genomic View for RNU6-1231P Gene

Genes around RNU6-1231P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1231P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1231P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1231P Gene

Proteins for RNU6-1231P Gene

Post-translational modifications for RNU6-1231P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1231P Gene

Domains & Families for RNU6-1231P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1231P Gene

Function for RNU6-1231P Gene

Phenotypes From GWAS Catalog for RNU6-1231P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1231P Gene

Localization for RNU6-1231P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1231P Gene

Pathways & Interactions for RNU6-1231P Gene

SuperPathways for RNU6-1231P Gene

No Data Available

Interacting Proteins for RNU6-1231P Gene

Gene Ontology (GO) - Biological Process for RNU6-1231P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1231P Gene

Drugs & Compounds for RNU6-1231P Gene

No Compound Related Data Available

Transcripts for RNU6-1231P Gene

mRNA/cDNA for RNU6-1231P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1231P Gene

No ASD Table

Relevant External Links for RNU6-1231P Gene

GeneLoc Exon Structure for
RNU6-1231P
ECgene alternative splicing isoforms for
RNU6-1231P

Expression for RNU6-1231P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1231P Gene

genes like me logo Genes that share expression patterns with RNU6-1231P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1231P Gene

Orthologs for RNU6-1231P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNU6-1231P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 99 (a)
OneToOne
Species where no ortholog for RNU6-1231P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1231P Gene

ENSEMBL:
Gene Tree for RNU6-1231P (if available)
TreeFam:
Gene Tree for RNU6-1231P (if available)

Paralogs for RNU6-1231P Gene

No data available for Paralogs for RNU6-1231P Gene

Variants for RNU6-1231P Gene

Additional Variant Information for RNU6-1231P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1231P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1231P Gene

Disorders for RNU6-1231P Gene

No disorders were found for RNU6-1231P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1231P Gene

Publications for RNU6-1231P Gene

No publications were found for RNU6-1231P Gene.

Products for RNU6-1231P Gene

Sources for RNU6-1231P Gene

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