Aliases for RNU6-1223P Gene

Aliases for RNU6-1223P Gene

  • RNA, U6 Small Nuclear 1223, Pseudogene 2 3 5

External Ids for RNU6-1223P Gene

Previous GeneCards Identifiers for RNU6-1223P Gene

  • GC19M001617
  • GC00U934778
  • GC19M001630
  • GC19M001633
  • GC19M001641
  • GC19M001619
  • GC19M001622
  • GC19M001628

Summaries for RNU6-1223P Gene

GeneCards Summary for RNU6-1223P Gene

RNU6-1223P (RNA, U6 Small Nuclear 1223, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1223P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1223P Gene

Genomics for RNU6-1223P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1223P Gene

Promoters and enhancers for RNU6-1223P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J001616 Enhancer 0.9 Ensembl ENCODE 500.7 -0.9 -936 2.4 CTCF ZNF623 RAD21 PCBP1 SP2 ZNF263 SMC3 POLR2A POLR2G TCF12 RF00026-498 RNU6-1223P SF3A2 TCF3 DAZAP1 lnc-UQCR11-2
GH19J001725 Promoter/Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 11.7 -109.1 -109128 0.7 NRF1 ZBTB5 ZBTB26 RFX1 ZBTB25 MYC HINFP ZNF341 RBM25 OSR2 ENSG00000275642 ONECUT3 ATP8B3 REXO1 RNU6-1223P TCF3 APC2 CBARP HSALNG0123072
GH19J001667 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 12.3 -51.7 -51722 2.3 ZBTB10 MEF2C TRIM22 ZEB1 ZNF341 ZNF148 EZH2 POLR2A TCF12 NFIC lnc-ONECUT3-4 TMEM259 SF3A2 CIRBP RNU6-1223P PTBP1 ATP8B3 REXO1 LOC100288123 RPS15
GH19J001660 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.7 -44.3 -44306 1.8 SP1 EP300 RELA BCL11A POLR2A CBFB ZNF384 ARNT MEF2B NBN RNU6-1223P ATP8B3 REXO1 lnc-ONECUT3-4 lnc-ONECUT3-5
GH19J001835 Enhancer 1.1 ENCODE dbSUPER 10.5 -220.5 -220537 2.8 CTCF POLR2G PHB2 ZIC2 REST MYC RAD21 CTBP1 ZBTB7A SKI KLF16 ATP8B3 TCF3 RNU6-1223P LOC100288123 REXO1 lnc-KLF16-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1223P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1223P Gene

Genomic Locations for RNU6-1223P Gene
chr19:1,616,492-1,616,595
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-1223P Gene

Genes around RNU6-1223P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1223P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1223P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1223P Gene

Proteins for RNU6-1223P Gene

Post-translational modifications for RNU6-1223P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1223P Gene

Domains & Families for RNU6-1223P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1223P Gene

Function for RNU6-1223P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1223P Gene

Localization for RNU6-1223P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1223P Gene

Pathways & Interactions for RNU6-1223P Gene

PathCards logo

SuperPathways for RNU6-1223P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-1223P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1223P Gene

Drugs & Compounds for RNU6-1223P Gene

No Compound Related Data Available

Transcripts for RNU6-1223P Gene

mRNA/cDNA for RNU6-1223P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1223P Gene

No ASD Table

Relevant External Links for RNU6-1223P Gene

GeneLoc Exon Structure for
RNU6-1223P

Expression for RNU6-1223P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1223P Gene

genes like me logo Genes that share expression patterns with RNU6-1223P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1223P Gene

Orthologs for RNU6-1223P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1223P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 70 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 31
  • 65 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23242 31
  • 59 (a)
ManyToMany
Species where no ortholog for RNU6-1223P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1223P Gene

ENSEMBL:
Gene Tree for RNU6-1223P (if available)
TreeFam:
Gene Tree for RNU6-1223P (if available)

Paralogs for RNU6-1223P Gene

No data available for Paralogs for RNU6-1223P Gene

Variants for RNU6-1223P Gene

Additional Variant Information for RNU6-1223P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1223P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1223P Gene

Disorders for RNU6-1223P Gene

No disorders were found for RNU6-1223P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1223P Gene

Publications for RNU6-1223P Gene

No publications were found for RNU6-1223P Gene.

Products for RNU6-1223P Gene

Sources for RNU6-1223P Gene