Aliases for RNU6-1188P Gene

Aliases for RNU6-1188P Gene

  • RNA, U6 Small Nuclear 1188, Pseudogene 2 3 5

External Ids for RNU6-1188P Gene

Previous GeneCards Identifiers for RNU6-1188P Gene

  • GC12P116522
  • GC00U936144

Summaries for RNU6-1188P Gene

GeneCards Summary for RNU6-1188P Gene

RNU6-1188P (RNA, U6 Small Nuclear 1188, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1188P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1188P Gene

Genomics for RNU6-1188P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1188P Gene

Promoters and enhancers for RNU6-1188P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116048 Enhancer 1.1 Ensembl ENCODE dbSUPER 13.6 -31.7 -31670 8.2 ZBTB6 FOXA1 NR2F6 HLF RAD21 ZNF121 SP1 CEBPG PRDM1 PKNOX1 RNU6-1188P piR-57461-053 RF00026-268 MED13L
GH12J116121 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 +40.3 40278 3.5 SIN3A SMARCE1 MYC CC2D1A ETV6 HLF MAX DACH1 MNT TEAD4 MAP1LC3B2 FBXW8 MED13L MIR620 ENSG00000258034 RF00026-268 RNU6-1188P lnc-C12orf49-6
GH12J116071 Enhancer 0.8 Ensembl dbSUPER 0.4 -9.0 -8970 7.2 ZNF384 MAFK ZNF680 CEBPG PKNOX1 CEBPB ZNF316 OSR2 ZNF580 GATA3 MIR620 RF00026-268 RNU6-1188P piR-57461-053 MED13L
GH12J116088 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +5.4 5431 2.8 ZNF121 RUNX3 BATF ATF2 RF00026-268 RNU6-1188P MIR620 MED13L
GH12J116066 Enhancer 0.8 ENCODE dbSUPER 0.4 -15.7 -15729 0.2 CTCF USF2 ZNF362 MYC ELF1 MAX RAD21 ELF3 ZNF384 REST RF00026-268 RNU6-1188P piR-57461-053 MED13L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1188P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1188P Gene

Genomic Locations for RNU6-1188P Gene
chr12:116,082,570-116,082,676
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1188P Gene

Genes around RNU6-1188P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1188P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1188P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1188P Gene

Proteins for RNU6-1188P Gene

Post-translational modifications for RNU6-1188P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1188P Gene

Domains & Families for RNU6-1188P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1188P Gene

Function for RNU6-1188P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1188P Gene

Localization for RNU6-1188P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1188P Gene

Pathways & Interactions for RNU6-1188P Gene

PathCards logo

SuperPathways for RNU6-1188P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1188P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1188P Gene

Drugs & Compounds for RNU6-1188P Gene

No Compound Related Data Available

Transcripts for RNU6-1188P Gene

mRNA/cDNA for RNU6-1188P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1188P Gene

No ASD Table

Relevant External Links for RNU6-1188P Gene

GeneLoc Exon Structure for
RNU6-1188P
ECgene alternative splicing isoforms for
RNU6-1188P

Expression for RNU6-1188P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1188P Gene

genes like me logo Genes that share expression patterns with RNU6-1188P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1188P Gene

Orthologs for RNU6-1188P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1188P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 33
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 33
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24035 33
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 33
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 33
  • 72 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 33
  • 70 (a)
OneToMany
Species where no ortholog for RNU6-1188P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1188P Gene

ENSEMBL:
Gene Tree for RNU6-1188P (if available)
TreeFam:
Gene Tree for RNU6-1188P (if available)

Paralogs for RNU6-1188P Gene

No data available for Paralogs for RNU6-1188P Gene

Variants for RNU6-1188P Gene

Additional Variant Information for RNU6-1188P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1188P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1188P Gene

Disorders for RNU6-1188P Gene

No disorders were found for RNU6-1188P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1188P Gene

Publications for RNU6-1188P Gene

No publications were found for RNU6-1188P Gene.

No data available for External Links for RNU6-1188P Gene

Products for RNU6-1188P Gene

Sources for RNU6-1188P Gene