Aliases for RNU6-1175P Gene

Aliases for RNU6-1175P Gene

  • RNA, U6 Small Nuclear 1175, Pseudogene 2 3 5
  • RNU6-1175P 5

External Ids for RNU6-1175P Gene

Previous GeneCards Identifiers for RNU6-1175P Gene

  • GC11P069926
  • GC00U935590
  • GC11P070076

Summaries for RNU6-1175P Gene

GeneCards Summary for RNU6-1175P Gene

RNU6-1175P (RNA, U6 Small Nuclear 1175, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1175P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1175P Gene

Genomics for RNU6-1175P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1175P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070072 Enhancer 0.9 Ensembl ENCODE dbSUPER 250.7 -1.6 -1636 1.8 BCL11A ATF2 JUNB SP7 ZBED1 NANOG EGR2 CREM EED RUNX3 RNU6-1175P RF00026-180 LINC02753 ANO1 HSALNG0085407 lnc-ANO1-2 LINC02584 FADD
GH11J070078 Enhancer 0.6 Ensembl dbSUPER 250.7 +0.9 938 0.2 FOXA2 RXRA FOXA1 CEBPB SP1 RNU6-1175P RF00026-180 LINC02584 ANO1 FADD
GH11J070077 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.6 4582 4.4 NFIC ZIC2 REST CTCF RAD21 JUND ZNF664 ZNF687 PKNOX1 MNT ANO1 LINC02753 RNU6-1175P RF00026-180 LINC02584 FADD
GH11J070082 Enhancer 0.6 dbSUPER 0.4 +9.5 9472 4.6 YY1 REST CTCF RXRA RAD21 HNF4A MAX SP1 SMC3 SP5 LINC02584 ANO1-AS1 LINC02753 ANO1 RF00026-180 RNU6-1175P FADD
GH11J070073 Enhancer 0.3 Ensembl dbSUPER 0.7 -3.1 -3062 0.2 HSALNG0085407 lnc-ANO1-1 RNU6-1175P RF00026-180 lnc-ANO1-2 LINC02584 ANO1 FADD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1175P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1175P Gene

Latest Assembly
chr11:70,075,363-70,075,469
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Previous Assembly
chr11:69,921,469-69,921,575
(GRCh37/hg19 by Entrez Gene)
Size:
107 bases
Orientation:
Plus strand

chr11:69,921,469-69,921,575
(GRCh37/hg19 by Ensembl)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1175P Gene

Genes around RNU6-1175P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1175P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1175P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1175P Gene

Proteins for RNU6-1175P Gene

Post-translational modifications for RNU6-1175P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1175P Gene

Domains & Families for RNU6-1175P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1175P Gene

Function for RNU6-1175P Gene

Phenotypes From GWAS Catalog for RNU6-1175P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1175P Gene

Localization for RNU6-1175P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1175P Gene

Pathways & Interactions for RNU6-1175P Gene

PathCards logo

SuperPathways for RNU6-1175P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1175P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1175P Gene

Drugs & Compounds for RNU6-1175P Gene

No Compound Related Data Available

Transcripts for RNU6-1175P Gene

mRNA/cDNA for RNU6-1175P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1175P Gene

No ASD Table

Relevant External Links for RNU6-1175P Gene

GeneLoc Exon Structure for
RNU6-1175P

Expression for RNU6-1175P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1175P Gene

Orthologs for RNU6-1175P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1175P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 30
  • 98 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U6 30
  • 93 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U6 30 30 30 30 30 30
  • 88 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm23293 30
  • 84 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U6 30
  • 84 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U6 30
  • 82 (a)
ManyToMany
Species where no ortholog for RNU6-1175P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-1175P Gene

ENSEMBL:
Gene Tree for RNU6-1175P (if available)
TreeFam:
Gene Tree for RNU6-1175P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU6-1175P

Paralogs for RNU6-1175P Gene

No data available for Paralogs for RNU6-1175P Gene

Variants for RNU6-1175P Gene

Additional Variant Information for RNU6-1175P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1175P
Leiden Open Variation Database (LOVD)
RNU6-1175P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1175P Gene

Disorders for RNU6-1175P Gene

No disorders were found for RNU6-1175P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1175P Gene

Publications for RNU6-1175P Gene

No publications were found for RNU6-1175P Gene.

No data available for Mastermind for RNU6-1175P Gene

Products for RNU6-1175P Gene

Sources for RNU6-1175P Gene