Aliases for RNU6-1145P Gene

Aliases for RNU6-1145P Gene

  • RNA, U6 Small Nuclear 1145, Pseudogene 2 3 5

External Ids for RNU6-1145P Gene

Previous GeneCards Identifiers for RNU6-1145P Gene

  • GC02P061834
  • GC00U935787

Summaries for RNU6-1145P Gene

GeneCards Summary for RNU6-1145P Gene

RNU6-1145P (RNA, U6 Small Nuclear 1145, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1145P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1145P Gene

Genomics for RNU6-1145P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1145P Gene

Promoters and enhancers for RNU6-1145P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J061606 Enhancer 0.3 Ensembl 500.7 +0.7 685 0.6 ZFHX2 EGR2 RF00026-550 RNU6-1145P lnc-XPO1-2
GH02J061629 Enhancer 1.1 Ensembl ENCODE 12.7 +24.2 24185 0.4 EP300 FOXK2 ZNF217 TCF12 NCOR1 TCF7 ZBTB25 TGIF2 SMARCC2 SKI XPO1 USP34 RNU6-1145P CCT4 PAPOLG lnc-XPO1-6 lnc-XPO1-2 HSALNG0015326
GH02J061418 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.3 -180.2 -180215 12.8 CTCF NRF1 ZBTB25 TGIF2 RAD21 TRIM22 SMC3 FOXA2 ZSCAN9 TCF12 piR-61945-279 AHSA2P LOC339803 USP34 ENSG00000273302 RNU6-1145P CCT4 COMMD1 LINC01185 REL
GH02J061707 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.3 +102.9 102916 2.1 ZBTB40 ZSCAN5C SP1 EP300 FOXA1 JUND MEF2C ZBTB25 SKI TRIM22 RNU6-1145P CCT4 COMMD1 AHSA2P ENSG00000213486 LOC647077 lnc-FAM161A-3 lnc-FAM161A-4 lnc-FAM161A-1
GH02J061658 Enhancer 1 Ensembl ENCODE 11.7 +54.5 54454 2.7 CTCF TCF12 REST RAD21 SKI TRIM22 SMC3 ZNF585B ESRRA FOXA2 RNU6-1145P AHSA2P HSALNG0015332 piR-48759-167
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1145P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1145P Gene

Genomic Locations for RNU6-1145P Gene
chr2:61,605,616-61,605,722
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1145P Gene

Genes around RNU6-1145P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1145P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1145P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1145P Gene

Proteins for RNU6-1145P Gene

Post-translational modifications for RNU6-1145P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1145P Gene

Domains & Families for RNU6-1145P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1145P Gene

Function for RNU6-1145P Gene

Phenotypes From GWAS Catalog for RNU6-1145P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1145P Gene

Localization for RNU6-1145P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1145P Gene

Pathways & Interactions for RNU6-1145P Gene

PathCards logo

SuperPathways for RNU6-1145P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-1145P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1145P Gene

Drugs & Compounds for RNU6-1145P Gene

No Compound Related Data Available

Transcripts for RNU6-1145P Gene

mRNA/cDNA for RNU6-1145P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1145P Gene

No ASD Table

Relevant External Links for RNU6-1145P Gene

GeneLoc Exon Structure for
RNU6-1145P

Expression for RNU6-1145P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1145P Gene

Orthologs for RNU6-1145P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1145P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 31
  • 93 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 88 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U6 31
  • 86 (a)
ManyToMany
Species where no ortholog for RNU6-1145P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1145P Gene

ENSEMBL:
Gene Tree for RNU6-1145P (if available)
TreeFam:
Gene Tree for RNU6-1145P (if available)

Paralogs for RNU6-1145P Gene

No data available for Paralogs for RNU6-1145P Gene

Variants for RNU6-1145P Gene

Additional Variant Information for RNU6-1145P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1145P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1145P Gene

Disorders for RNU6-1145P Gene

No disorders were found for RNU6-1145P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1145P Gene

Publications for RNU6-1145P Gene

No publications were found for RNU6-1145P Gene.

No data available for Mastermind for RNU6-1145P Gene

Products for RNU6-1145P Gene

Sources for RNU6-1145P Gene