Aliases for RNU6-1143P Gene

Aliases for RNU6-1143P Gene

  • RNA, U6 Small Nuclear 1143, Pseudogene 2 3 5
  • RNU6-1143P 5

External Ids for RNU6-1143P Gene

Previous GeneCards Identifiers for RNU6-1143P Gene

  • GC11M003738
  • GC00U936188

Summaries for RNU6-1143P Gene

GeneCards Summary for RNU6-1143P Gene

RNU6-1143P (RNA, U6 Small Nuclear 1143, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1143P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1143P Gene

Genomics for RNU6-1143P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1143P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J003778 Enhancer 0.2 dbSUPER 11 -64.2 -64214 0.7 piR-32214-072 RNU6-1143P CHRNA10 ENSG00000255367 NUP98 PGAP2 lnc-RHOG-3
GH11J003709 Enhancer 0.6 Ensembl ENCODE 0.7 +4.6 4576 1.8 KDM1A HNF4A RXRA NANOG CHRNA10 NUP98 ART5 RF00026-174 RNU6-1143P lnc-CHRNA10-2 PGAP2
GH11J003702 Enhancer 0.3 Ensembl 0.4 +12.7 12674 0.4 ZSCAN4 ZBTB17 CHRNA10 NUP98 ART1 lnc-CHRNA10-2 RF00026-174 RNU6-1143P PGAP2
GH11J003711 Enhancer 0.2 Ensembl 0.7 +3.2 3174 0.2 RF00026-174 RNU6-1143P lnc-CHRNA10-2 CHRNA10 NUP98 PGAP2
GH11J003707 Enhancer 0.2 Ensembl 0.4 +7.3 7274 0.4 CHRNA10 NUP98 RNU6-1143P RF00026-174 lnc-CHRNA10-2 PGAP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1143P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1143P Gene

Genomic Locations for RNU6-1143P Gene
chr11:3,714,772-3,714,875
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for RNU6-1143P Gene

Genes around RNU6-1143P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1143P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1143P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1143P Gene

Proteins for RNU6-1143P Gene

Post-translational modifications for RNU6-1143P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1143P Gene

Domains & Families for RNU6-1143P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1143P Gene

Function for RNU6-1143P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1143P Gene

Localization for RNU6-1143P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1143P Gene

Pathways & Interactions for RNU6-1143P Gene

PathCards logo

SuperPathways for RNU6-1143P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1143P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1143P Gene

Drugs & Compounds for RNU6-1143P Gene

No Compound Related Data Available

Transcripts for RNU6-1143P Gene

mRNA/cDNA for RNU6-1143P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1143P Gene

No ASD Table

Relevant External Links for RNU6-1143P Gene

GeneLoc Exon Structure for
RNU6-1143P

Expression for RNU6-1143P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1143P Gene

genes like me logo Genes that share expression patterns with RNU6-1143P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1143P Gene

Orthologs for RNU6-1143P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU6-1143P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 97 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22686 31
  • 67 (a)
ManyToMany
Species where no ortholog for RNU6-1143P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-1143P Gene

ENSEMBL:
Gene Tree for RNU6-1143P (if available)
TreeFam:
Gene Tree for RNU6-1143P (if available)

Paralogs for RNU6-1143P Gene

No data available for Paralogs for RNU6-1143P Gene

Variants for RNU6-1143P Gene

Additional Variant Information for RNU6-1143P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1143P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1143P Gene

Disorders for RNU6-1143P Gene

No disorders were found for RNU6-1143P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1143P Gene

Publications for RNU6-1143P Gene

No publications were found for RNU6-1143P Gene.

No data available for Mastermind for RNU6-1143P Gene

Products for RNU6-1143P Gene

Sources for RNU6-1143P Gene