Aliases for RNU6-1133P Gene

Aliases for RNU6-1133P Gene

  • RNA, U6 Small Nuclear 1133, Pseudogene 2 3 5
  • RNA, U6 Small Nuclear 186, Pseudogene 2 3
  • RNU6-1133P 5
  • RNU6-186P 3

External Ids for RNU6-1133P Gene

Previous HGNC Symbols for RNU6-1133P Gene

  • RNU6-186P

Previous GeneCards Identifiers for RNU6-1133P Gene

  • GC06P031051
  • GC00U935519
  • GC06P031084
  • GC06P032296
  • GC06P032485
  • GC06P032590
  • GC06P033375
  • GC06P031085
  • GC06P031204
  • GC06P031230
  • GC06P031432
  • GC06P032072

Summaries for RNU6-1133P Gene

GeneCards Summary for RNU6-1133P Gene

RNU6-1133P (RNA, U6 Small Nuclear 1133, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1133P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1133P Gene

Genomics for RNU6-1133P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1133P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031083 Enhancer 1.1 Ensembl ENCODE 600.7 +0.8 834 1.2 CTCF ZNF629 IKZF1 ZNF692 ZNF174 JUND PRDM1 ZNF143 ZIC2 PKNOX1 RF00017-5410 RNU6-1133P RF00026-930 HCG22 HLA-C PRRC2A PSORS1C1 MDC1 HCG18 TRIM39
GH06J031082 Enhancer 0.2 Ensembl 600.7 -0.3 -309 0.2 RF00017-5410 RNU6-1133P RF00026-930 piR-42700-114 C6orf15 HCG22 MN298114-200
GH06J030875 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -206.2 -206190 3.5 ARHGAP35 GATAD2A CTCF ZNF629 TFE3 LEF1 IKZF1 NFKBIZ ZNF692 RCOR2 DDR1 DDR1-DT VARS2 DDX39B GTF2H4 MDC1 ABCF1 LSM2 NFKBIL1 TRIM39
GH06J030872 Enhancer 1.2 FANTOM5 dbSUPER 11.1 -210.0 -210013 0.4 RFX1 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A HNRNPUL1 PKNOX1 MTA1 VARS2 LSM2 NRM TRIM39 DDX39B LY6G5B DHX16 POLR1H TCF19 CSNK2B
GH06J030857 Enhancer 1 Ensembl ENCODE dbSUPER 11.5 -225.5 -225522 1.4 SP1 ZIC2 ARNT ZBTB44 RUNX3 ESR1 TGIF2 BCLAF1 OSR2 BCL11A VARS2 RNU6-1133P MUCL3 HCG21 HCG9 ENSG00000272501 HLA-J RF00017-5407 piR-36588-363 DDR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1133P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1133P Gene

Genomic Locations for RNU6-1133P Gene
chr6:31,083,010-31,083,109
(GRCh38/hg38)
Size:
100 bases
Orientation:
Plus strand

Genomic View for RNU6-1133P Gene

Genes around RNU6-1133P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1133P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1133P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for RNU6-1133P Gene

Post-translational modifications for RNU6-1133P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1133P Gene

Domains & Families for RNU6-1133P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1133P Gene

Function for RNU6-1133P Gene

Phenotypes From GWAS Catalog for RNU6-1133P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1133P Gene

Localization for RNU6-1133P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1133P Gene

Pathways & Interactions for RNU6-1133P Gene

PathCards logo

SuperPathways for RNU6-1133P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1133P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1133P Gene

Drugs & Compounds for RNU6-1133P Gene

No Compound Related Data Available

Transcripts for RNU6-1133P Gene

mRNA/cDNA for RNU6-1133P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1133P Gene

No ASD Table

Relevant External Links for RNU6-1133P Gene

GeneLoc Exon Structure for
RNU6-1133P

Expression for RNU6-1133P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1133P Gene

genes like me logo Genes that share expression patterns with RNU6-1133P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1133P Gene

Orthologs for RNU6-1133P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1133P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 100 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia U6 31
  • 60 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm24073 31
  • 57 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia U6 31
  • 56 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 53 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U6 31
  • 50 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U6 31
  • 77 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia U6 31
  • 64 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U6 31
  • 57 (a)
OneToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U6 31
  • 61 (a)
OneToMany
Species where no ortholog for RNU6-1133P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU6-1133P Gene

ENSEMBL:
Gene Tree for RNU6-1133P (if available)
TreeFam:
Gene Tree for RNU6-1133P (if available)

Paralogs for RNU6-1133P Gene

No data available for Paralogs for RNU6-1133P Gene

Variants for RNU6-1133P Gene

Additional Variant Information for RNU6-1133P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1133P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1133P Gene

Disorders for RNU6-1133P Gene

No disorders were found for RNU6-1133P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1133P Gene

Publications for RNU6-1133P Gene

No publications were found for RNU6-1133P Gene.

Products for RNU6-1133P Gene

Sources for RNU6-1133P Gene