Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1101P Gene

Aliases for RNU6-1101P Gene

  • RNA, U6 Small Nuclear 1101, Pseudogene 2 3 5

External Ids for RNU6-1101P Gene

Previous GeneCards Identifiers for RNU6-1101P Gene

  • GC03M194256
  • GC00U935178

Summaries for RNU6-1101P Gene

GeneCards Summary for RNU6-1101P Gene

RNU6-1101P (RNA, U6 Small Nuclear 1101, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1101P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1101P Gene

Genomics for RNU6-1101P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1101P Gene

Promoters and enhancers for RNU6-1101P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I194532 Enhancer 0.2 FANTOM5 550.8 +0.8 759 0.1 RNU6-1101P ATP13A3 ENSG00000244675
GH03I194484 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +45.9 45907 6.1 HDGF PKNOX1 ARNT MLX ARID4B IRF4 YY1 ZNF766 E2F8 ZNF143 LINC00884 RNU6-1101P ACAP2 GP5 ATP13A3 LSG1 HES1
GH03I194571 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -40.2 -40248 5.3 PKNOX1 SMAD1 MLX ARNT ARID4B FEZF1 ZNF2 SLC30A9 ZNF766 E2F8 ATP13A3 TMEM44-AS1 LSG1 ENSG00000244675 LINC00884 RNU6-1101P GP5 RNU6ATAC24P CPN2 ACAP2
GH03I194561 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.5 -28.2 -28165 1.4 PKNOX1 ATF1 ARNT BRCA1 TCF12 ATF7 FOS RXRA MEF2D ATF4 TMEM44-AS1 ATP13A3 RNU6-1101P ENSG00000244675 LINC00884 GP5 HES1 RPL23AP93
GH03I194493 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.6 +38.9 38936 2 CLOCK FOXA2 MLX ARID4B NEUROD1 SIN3A FEZF1 ZBTB7B YY1 FOS ATP13A3 ENSG00000244675 LRRC15 RNU6-1101P LSG1 LINC00884
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1101P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1101P Gene

Genomic Locations for RNU6-1101P Gene
chr3:194,533,503-194,533,583
(GRCh38/hg38)
Size:
81 bases
Orientation:
Minus strand

Genomic View for RNU6-1101P Gene

Genes around RNU6-1101P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1101P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1101P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1101P Gene

Proteins for RNU6-1101P Gene

Post-translational modifications for RNU6-1101P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1101P Gene

Domains & Families for RNU6-1101P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1101P Gene

Function for RNU6-1101P Gene

Phenotypes From GWAS Catalog for RNU6-1101P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1101P Gene

Localization for RNU6-1101P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1101P Gene

Pathways & Interactions for RNU6-1101P Gene

SuperPathways for RNU6-1101P Gene

No Data Available

Interacting Proteins for RNU6-1101P Gene

Gene Ontology (GO) - Biological Process for RNU6-1101P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1101P Gene

Drugs & Compounds for RNU6-1101P Gene

No Compound Related Data Available

Transcripts for RNU6-1101P Gene

mRNA/cDNA for RNU6-1101P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1101P Gene

No ASD Table

Relevant External Links for RNU6-1101P Gene

GeneLoc Exon Structure for
RNU6-1101P
ECgene alternative splicing isoforms for
RNU6-1101P

Expression for RNU6-1101P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1101P Gene

Orthologs for RNU6-1101P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1101P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 34
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 34
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 34
  • 58 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U6 34
  • 57 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22485 34
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 34
  • 54 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U6 34
  • 47 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 34
  • 59 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U6 34
  • 62 (a)
OneToMany
Species where no ortholog for RNU6-1101P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU6-1101P Gene

ENSEMBL:
Gene Tree for RNU6-1101P (if available)
TreeFam:
Gene Tree for RNU6-1101P (if available)

Paralogs for RNU6-1101P Gene

No data available for Paralogs for RNU6-1101P Gene

Variants for RNU6-1101P Gene

Additional Variant Information for RNU6-1101P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1101P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1101P Gene

Disorders for RNU6-1101P Gene

No disorders were found for RNU6-1101P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1101P Gene

Publications for RNU6-1101P Gene

No publications were found for RNU6-1101P Gene.

Products for RNU6-1101P Gene

Sources for RNU6-1101P Gene

Content
Loading form....