Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNU6-1086P Gene

Subcategory (RNA class) for RNU6-1086P Gene

snRNA

Aliases for RNU6-1086P Gene

  • RNA, U6 Small Nuclear 1086, Pseudogene 2 3 5

External Ids for RNU6-1086P Gene

ORGUL Members for RNU6-1086P Gene

Previous GeneCards Identifiers for RNU6-1086P Gene

  • GC08P027540
  • GC00U934795

Summaries for RNU6-1086P Gene

GeneCards Summary for RNU6-1086P Gene

RNU6-1086P (RNA, U6 Small Nuclear 1086, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU6-1086P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU6-1086P Gene

Genomics for RNU6-1086P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1086P Gene

Promoters and enhancers for RNU6-1086P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J027675 Enhancer 1.1 Ensembl ENCODE 600.7 +0.2 165 10.4 ZNF121 MAFK SP1 PRDM1 SMARCA4 KAT8 FOSL2 RXRA PRDM10 ZIC2 RNU6-1086P SCARA3 CCDC25 CLU ELP3 FZD3 ENSG00000253560
GH08J027719 Enhancer 0.7 Ensembl dbSUPER 11.3 +40.1 40097 0.6 JUND FOS ZNF189 FOSL2 JUN ZNF660 ZBTB6 RNU6-1086P CLU CCDC25 ENSG00000253875 MIR3622B
GH08J027653 Enhancer 0.5 ENCODE 11.4 -26.2 -26177 0.2 SP1 YY1 HNF4A RXRA REST HNF4G RNU6-1086P CLU CCDC25 EPHX2 CHRNA2 SCARA3
GH08J027654 Enhancer 0.3 Ensembl 11.4 -26.7 -26735 0.2 ZNF600 RNU6-1086P CLU CCDC25 EPHX2 CHRNA2 SCARA3
GH08J027647 Enhancer 0.3 Ensembl 11.3 -32.5 -32535 0.2 MNT SCARA3 RNU6-1086P ENSG00000253875
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1086P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1086P Gene

Genomic Locations for RNU6-1086P Gene
chr8:27,679,836-27,679,935
(GRCh38/hg38)
Size:
100 bases
Orientation:
Plus strand

Genomic View for RNU6-1086P Gene

Genes around RNU6-1086P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1086P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1086P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1086P Gene

Proteins for RNU6-1086P Gene

Post-translational modifications for RNU6-1086P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1086P Gene

Domains & Families for RNU6-1086P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1086P Gene

Function for RNU6-1086P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1086P Gene

Localization for RNU6-1086P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1086P Gene

Pathways & Interactions for RNU6-1086P Gene

PathCards logo

SuperPathways for RNU6-1086P Gene

No Data Available

Interacting Proteins for RNU6-1086P Gene

Gene Ontology (GO) - Biological Process for RNU6-1086P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1086P Gene

Drugs & Compounds for RNU6-1086P Gene

No Compound Related Data Available

Transcripts for RNU6-1086P Gene

mRNA/cDNA for RNU6-1086P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1086P Gene

No ASD Table

Relevant External Links for RNU6-1086P Gene

GeneLoc Exon Structure for
RNU6-1086P
ECgene alternative splicing isoforms for
RNU6-1086P

Expression for RNU6-1086P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1086P Gene

Orthologs for RNU6-1086P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1086P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U6 35
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U6 35
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U6 35
  • 73 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U6 35
  • 72 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U6 35
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24661 35
  • 67 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U6 35
  • 72 (a)
OneToMany
Species where no ortholog for RNU6-1086P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1086P Gene

ENSEMBL:
Gene Tree for RNU6-1086P (if available)
TreeFam:
Gene Tree for RNU6-1086P (if available)

Paralogs for RNU6-1086P Gene

No data available for Paralogs for RNU6-1086P Gene

Variants for RNU6-1086P Gene

Additional Variant Information for RNU6-1086P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1086P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1086P Gene

Disorders for RNU6-1086P Gene

No disorders were found for RNU6-1086P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1086P Gene

Publications for RNU6-1086P Gene

No publications were found for RNU6-1086P Gene.

No data available for External Links for RNU6-1086P Gene

Products for RNU6-1086P Gene

Sources for RNU6-1086P Gene

Content
Loading form....