Aliases for RNU6-1084P Gene

Aliases for RNU6-1084P Gene

  • RNA, U6 Small Nuclear 1084, Pseudogene 2 3 5
  • RNU6-1084P 5

External Ids for RNU6-1084P Gene

Previous GeneCards Identifiers for RNU6-1084P Gene

  • GC08M011251
  • GC00U934436

Summaries for RNU6-1084P Gene

GeneCards Summary for RNU6-1084P Gene

RNU6-1084P (RNA, U6 Small Nuclear 1084, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1084P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1084P Gene

Genomics for RNU6-1084P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1084P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011394 Enhancer 0.3 Ensembl 250.7 -0.6 -584 0.2 NR2F1 RNU6-1084P RF00026-1015 FAM167A-AS1 FAM167A piR-48209-669 SLC35G5
GH08J011393 Enhancer 0.3 ENCODE 250.7 -0.9 -850 0.2 NR2F1 RNU6-1084P RF00026-1015 TDH-AS1 FAM167A-AS1 FAM167A piR-48209-669 SLC35G5
GH08J011390 Enhancer 0.3 Ensembl 250.7 +1.5 1516 1.2 ZNF341 RNU6-1084P RF00026-1015 TDH-AS1 HSALNG0063439 RN7SL293P FAM167A-AS1 SLC35G5 FAM167A
GH08J011425 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.9 -35.4 -35375 5.6 ZIC2 CTCF BHLHE40 ATF4 GLIS1 SP7 TCF12 GATA2 ZNF561 ZBTB8A FAM167A BLK RNU6-1084P FAM167A-AS1 ENSG00000255310 FAM66A ENSG00000255556 FAM66D piR-42144 piR-31534-631
GH08J011421 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 -29.3 -29284 4.8 BCLAF1 SP1 ZNF207 BCL11A ZNF592 TARDBP TRIM22 BHLHE40 ZNF316 EBF1 lnc-BLK-2 piR-42144 piR-57527 FAM167A BLK RNU6-1084P FAM167A-AS1 TDH-AS1 TDH ENSG00000255310
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1084P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1084P Gene

Latest Assembly
chr8:11,392,411-11,392,517
(GRCh38/hg38)
Size:
107 bases
Orientation:
Minus strand

Previous Assembly
chr8:11,249,920-11,250,026
(GRCh37/hg19 by Entrez Gene)
Size:
107 bases
Orientation:
Minus strand

chr8:11,249,920-11,250,026
(GRCh37/hg19 by Ensembl)
Size:
107 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):1,955,986-1,956,092 (+)

Genomic View for RNU6-1084P Gene

Genes around RNU6-1084P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1084P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1084P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1084P Gene

Proteins for RNU6-1084P Gene

Post-translational modifications for RNU6-1084P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1084P Gene

Domains & Families for RNU6-1084P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1084P Gene

Function for RNU6-1084P Gene

Phenotypes From GWAS Catalog for RNU6-1084P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1084P Gene

Localization for RNU6-1084P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1084P Gene

Pathways & Interactions for RNU6-1084P Gene

PathCards logo

SuperPathways for RNU6-1084P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1084P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1084P Gene

Drugs & Compounds for RNU6-1084P Gene

No Compound Related Data Available

Transcripts for RNU6-1084P Gene

mRNA/cDNA for RNU6-1084P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1084P Gene

No ASD Table

Relevant External Links for RNU6-1084P Gene

GeneLoc Exon Structure for
RNU6-1084P

Expression for RNU6-1084P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1084P Gene

genes like me logo Genes that share expression patterns with RNU6-1084P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1084P Gene

Orthologs for RNU6-1084P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1084P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 30
  • 99 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U6 30
  • 89 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U6 30
  • 85 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U6 30
  • 83 (a)
ManyToMany
Species where no ortholog for RNU6-1084P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-1084P Gene

ENSEMBL:
Gene Tree for RNU6-1084P (if available)
TreeFam:
Gene Tree for RNU6-1084P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU6-1084P

Paralogs for RNU6-1084P Gene

No data available for Paralogs for RNU6-1084P Gene

Variants for RNU6-1084P Gene

Additional Variant Information for RNU6-1084P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1084P
Leiden Open Variation Database (LOVD)
RNU6-1084P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1084P Gene

Disorders for RNU6-1084P Gene

No disorders were found for RNU6-1084P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1084P Gene

Publications for RNU6-1084P Gene

No publications were found for RNU6-1084P Gene.

No data available for Mastermind for RNU6-1084P Gene

Products for RNU6-1084P Gene

Sources for RNU6-1084P Gene