Aliases for RNU6-1069P Gene

Aliases for RNU6-1069P Gene

  • RNA, U6 Small Nuclear 1069, Pseudogene 2 3 5
  • RNU6-1069P 5

External Ids for RNU6-1069P Gene

Previous GeneCards Identifiers for RNU6-1069P Gene

  • GC12M031957
  • GC00U935914

Summaries for RNU6-1069P Gene

GeneCards Summary for RNU6-1069P Gene

RNU6-1069P (RNA, U6 Small Nuclear 1069, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1069P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1069P Gene

Genomics for RNU6-1069P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU6-1069P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J031803 Enhancer 0.6 ENCODE 250.7 -1.1 -1143 1.2 BCL11A IRF4 BATF ZNF24 ELF1 ATF2 JUNB MAFK ARID3A IKZF1 LOC107984532 RF00026-227 RNU6-1069P piR-31470-123 H3-5 LINC02422 RESF1
GH12J031801 Enhancer 0.3 Ensembl 250.7 +0.8 789 1.4 ZBTB33 MLLT1 RF00026-227 RNU6-1069P LOC107984532 piR-53738 H3-5 LINC02422 RESF1
GH12J031763 Enhancer 0.9 Ensembl ENCODE 13.2 +39.7 39689 1.2 BCL11A ZEB1 TRIM22 IRF4 JUND ZNF316 FOSL1 BATF ZSCAN23 ZBTB33 ENSG00000257511 DDX11 H3-5 RNU6-1069P DDX11-AS1 LOC105369724 LOC107984470 lnc-AMN1-2 AMN1
GH12J031765 Enhancer 0.3 Ensembl 13.2 +37.0 36989 1.8 ZBTB33 H3-5 RNU6-1069P OVOS2 LOC105369724 LOC107984470 lnc-AMN1-2 AMN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1069P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-1069P Gene

Latest Assembly
chr12:31,802,958-31,803,090
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand

Previous Assembly
chr12:31,955,892-31,956,024
(GRCh37/hg19 by Entrez Gene)
Size:
133 bases
Orientation:
Minus strand

chr12:31,955,892-31,956,024
(GRCh37/hg19 by Ensembl)
Size:
133 bases
Orientation:
Minus strand

Genomic View for RNU6-1069P Gene

Genes around RNU6-1069P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1069P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1069P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU6-1069P Gene

Proteins for RNU6-1069P Gene

Post-translational modifications for RNU6-1069P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1069P Gene

Domains & Families for RNU6-1069P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1069P Gene

Function for RNU6-1069P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1069P Gene

Localization for RNU6-1069P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1069P Gene

Pathways & Interactions for RNU6-1069P Gene

PathCards logo

SuperPathways for RNU6-1069P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1069P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1069P Gene

Drugs & Compounds for RNU6-1069P Gene

No Compound Related Data Available

Transcripts for RNU6-1069P Gene

mRNA/cDNA for RNU6-1069P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1069P Gene

No ASD Table

Relevant External Links for RNU6-1069P Gene

GeneLoc Exon Structure for
RNU6-1069P

Expression for RNU6-1069P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1069P Gene

genes like me logo Genes that share expression patterns with RNU6-1069P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1069P Gene

Orthologs for RNU6-1069P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU6-1069P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U6 31
  • 98 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U6 31
  • 68 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U6 31
  • 55 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U6 31
  • 54 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U6 31
  • 57 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U6 31
  • 60 (a)
OneToMany
Species where no ortholog for RNU6-1069P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU6-1069P Gene

ENSEMBL:
Gene Tree for RNU6-1069P (if available)
TreeFam:
Gene Tree for RNU6-1069P (if available)

Paralogs for RNU6-1069P Gene

No data available for Paralogs for RNU6-1069P Gene

Variants for RNU6-1069P Gene

Additional Variant Information for RNU6-1069P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1069P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1069P Gene

Disorders for RNU6-1069P Gene

No disorders were found for RNU6-1069P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1069P Gene

Publications for RNU6-1069P Gene

No publications were found for RNU6-1069P Gene.

No data available for Mastermind for RNU6-1069P Gene

Products for RNU6-1069P Gene

Sources for RNU6-1069P Gene