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RNU6-1050P Gene(Pseudogene)

RNA, U6 Small Nuclear 1050, Pseudogene

GCID:
GC18P031937
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RNU6-1050P Gene

Subcategory (RNA class) for RNU6-1050P Gene

snRNA

Aliases for RNU6-1050P Gene

  • RNA, U6 Small Nuclear 1050, Pseudogene 2 3 5

External Ids for RNU6-1050P Gene

ORGUL Members for RNU6-1050P Gene

Previous GeneCards Identifiers for RNU6-1050P Gene

  • GC18P029519
  • GC00U935954

Summaries for RNU6-1050P Gene

GeneCards Summary for RNU6-1050P Gene

RNU6-1050P (RNA, U6 Small Nuclear 1050, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for RNU6-1050P Gene - the ORGUL cluster for this gene includes several descriptions:

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

  • U6 spliceosomal RNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA [2]. This model hits a large number of sequences in vertebrate genomes, which appear to be U6 derived pseudogenes or repeats. This family has a high significance threshold to minimise this problem, but many annotated pseudogenes remain.

Additional gene information for RNU6-1050P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU6-1050P Gene

Genomics for RNU6-1050P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNU6-1050P Gene

Promoters and enhancers for RNU6-1050P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18I031821 Enhancer 1.1 Ensembl ENCODE 10.6 -115.6 -115644 0.8 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 CAVIN1 NCOA1 ZNF592 MBD2 ENSG00000263393 ENSG00000263924 HNRNPA1P7 RNU6-1050P SLC25A52
GH18I032039 Enhancer 0.7 Ensembl ENCODE 11.3 +104.1 104078 4.1 MEF2D MEIS2 POLR2A SOX6 MYC RUNX3 SPI1 RNF125 TRAPPC8 RNU6-1050P HMGN2P44 GC18M032052 ENSG00000263917
GH18I031819 Enhancer 0.7 ENCODE 10.6 -118.0 -117987 0.9 CTCF RB1 CEBPG RAD21 CHAMP1 SMC3 ZNF143 SMARCA5 AFF1 ZNF654 TRAPPC8 RNU6-1050P ENSG00000263924 SLC25A52
GH18I031977 Enhancer 0.6 ENCODE 11.8 +39.9 39910 0.2 CTCF ZNF654 ATF1 TRIM22 MAFG REST RAD21 ZGPAT ZNF316 SMARCA4 TRAPPC8 RNU6-1050P ENSG00000280380 LOC100287539
GH18I031982 Enhancer 0.6 ENCODE 11.2 +45.5 45480 0.9 FOXA2 RXRA MAX REST RAD21 ZNF7 GABPA YY1 JUND ATF3 ENSG00000280380 RNF125 TRAPPC8 RNU6-1050P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU6-1050P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1050P Gene

Genomic Locations for RNU6-1050P Gene
chr18:31,937,533-31,937,639
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1050P Gene

Genes around RNU6-1050P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1050P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1050P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-1050P Gene

ORGUL Member Location for RNU6-1050P Gene

ORGUL Member Location for RNU6-1050P gene

Proteins for RNU6-1050P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-1050P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1050P Gene

Domains & Families for RNU6-1050P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU6-1050P Gene

Function for RNU6-1050P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1050P Gene

Localization for RNU6-1050P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1050P Gene

Pathways & Interactions for RNU6-1050P Gene

SuperPathways for RNU6-1050P Gene

PathCards logo More details on SuperPathways for RNU6-1050P
No Data Available

Interacting Proteins for RNU6-1050P Gene

Gene Ontology (GO) - Biological Process for RNU6-1050P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1050P Gene

Drugs & Compounds for RNU6-1050P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-1050P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-1050P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1050P Gene

No ASD Table

Relevant External Links for RNU6-1050P Gene

GeneLoc Exon Structure for
RNU6-1050P
ECgene alternative splicing isoforms for
RNU6-1050P

Expression for RNU6-1050P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1050P Gene

mRNA expression in normal human tissues for RNU6-1050P Gene
mRNA expression by GTEx for RNU6-1050P Gene
genes like me logo Genes that share expression patterns with RNU6-1050P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1050P Gene

Orthologs for RNU6-1050P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1050P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
 Mammalia Gm22971 34
  • 77 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia U6 34
  • 73 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U6 34
  • 73 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia U6 34
  • 72 (a)
 ManyToMany
Species where no ortholog for RNU6-1050P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1050P Gene

ENSEMBL:
Gene Tree for RNU6-1050P (if available)
TreeFam:
Gene Tree for RNU6-1050P (if available)

Paralogs for RNU6-1050P Gene

No data available for Paralogs for RNU6-1050P Gene

Variants for RNU6-1050P Gene

Additional Variant Information for RNU6-1050P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1050P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1050P Gene

Disorders for RNU6-1050P Gene

No disorders were found for RNU6-1050P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1050P Gene

Publications for RNU6-1050P Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for RNU6-1050P Gene

Sources for RNU6-1050P Gene

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