RNU6-1050P Gene (Pseudogene)

RNA, U6 Small Nuclear 1050, Pseudogene

GC18P031937
GIFtS:
7

Aliases for RNU6-1050P Gene

Aliases for RNU6-1050P Gene

  • RNA, U6 Small Nuclear 1050, Pseudogene 2 3 5

External Ids for RNU6-1050P Gene

Previous GeneCards Identifiers for RNU6-1050P Gene

  • GC18P029519
  • GC00U935954

Summaries for RNU6-1050P Gene

GeneCards Summary for RNU6-1050P Gene

RNU6-1050P (RNA, U6 Small Nuclear 1050, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1050P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1050P Gene

Genomics for RNU6-1050P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1050P Gene

Promoters and enhancers for RNU6-1050P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J031510 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -424.5 -424532 8.8 EP300 FOXK2 CTCF POLR2G NCOR1 KDM6A TCF7 FOXA1 TRIM28 ZBTB25 ENSG00000266521 DSG2 RNU6-1050P B4GALT6 DSC3 DSG1 DSC2 piR-45035-096 DSG2-AS1
GH18J031821 Enhancer 1.1 Ensembl ENCODE 10.6 -115.6 -115632 1 PHB2 ZBTB11 AFF1 TARDBP HES1 MYC CTBP1 HINFP HDAC3 NCOR1 RF00017-2650 RNU6-1050P SLC25A52 piR-43105-293 RF00017-2648
GH18J032039 Promoter/Enhancer 0.9 Ensembl ENCODE 11.3 +104.1 104078 4.1 MEF2C SPI1 MEIS2 POLR2A EZH2 MYC MEF2A SOX6 RUNX3 MEF2D RNF125 TRAPPC8 RNU6-1050P HMGN2P44 piR-50437-304 ENSG00000263917
GH18J032021 Promoter/Enhancer 0.9 Ensembl ENCODE 10.8 +84.9 84877 1.8 BCL6 ZNF3 SMARCA4 ZFP36 NANOG HNF1A RNF2 ZNF770 CBX8 RNF138 TRAPPC8 RNU6-1050P ENSG00000263917 HSALNG0120771 RNF125
GH18J031825 Enhancer 0.8 Ensembl ENCODE 10.9 -111.3 -111258 3.3 MYC POLR2G USF1 TRIM28 POLR2A WT1 SRF TCF12 POU2F2 SIN3A TRAPPC8 RNU6-1050P SLC25A52 RNF125 piR-43105-293 RF00017-2650 RF00017-2648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1050P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1050P Gene

Genomic Locations for RNU6-1050P Gene
chr18:31,937,533-31,937,639
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for RNU6-1050P Gene

Genes around RNU6-1050P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1050P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1050P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-1050P Gene

Proteins for RNU6-1050P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-1050P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1050P Gene

Domains & Families for RNU6-1050P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1050P Gene

Function for RNU6-1050P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU6-1050P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1050P Gene

Localization for RNU6-1050P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1050P Gene

Pathways & Interactions for RNU6-1050P Gene

PathCards logo

SuperPathways for RNU6-1050P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU6-1050P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-1050P Gene

Drugs & Compounds for RNU6-1050P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-1050P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-1050P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1050P Gene

No ASD Table

Relevant External Links for RNU6-1050P Gene

GeneLoc Exon Structure for
RNU6-1050P

Expression for RNU6-1050P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-1050P Gene

mRNA expression in normal human tissues for RNU6-1050P Gene
mRNA expression by GTEx for RNU6-1050P Gene
genes like me logo Genes that share expression patterns with RNU6-1050P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1050P Gene

Orthologs for RNU6-1050P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1050P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
 Mammalia Gm22971 31
  • 77 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia U6 31
  • 73 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U6 31
  • 73 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia U6 31
  • 72 (a)
 ManyToMany
Species where no ortholog for RNU6-1050P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1050P Gene

ENSEMBL:
Gene Tree for RNU6-1050P (if available)
TreeFam:
Gene Tree for RNU6-1050P (if available)

Paralogs for RNU6-1050P Gene

No data available for Paralogs for RNU6-1050P Gene

Variants for RNU6-1050P Gene

Additional Variant Information for RNU6-1050P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1050P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1050P Gene

Disorders for RNU6-1050P Gene

No disorders were found for RNU6-1050P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1050P Gene

Publications for RNU6-1050P Gene

No publications were found for RNU6-1050P Gene.

No data available for Mastermind for RNU6-1050P Gene

Products for RNU6-1050P Gene

Sources for RNU6-1050P Gene