RNU6-100P Gene (Pseudogene)

RNA, U6 Small Nuclear 100, Pseudogene

GC02P064578
GIFtS:
6
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Aliases for RNU6-100P Gene

Aliases for RNU6-100P Gene

  • RNA, U6 Small Nuclear 100, Pseudogene 2 3 5
  • RNU6-100P 5

External Ids for RNU6-100P Gene

Previous GeneCards Identifiers for RNU6-100P Gene

  • GC02P064810
  • GC00U934450

Summaries for RNU6-100P Gene

GeneCards Summary for RNU6-100P Gene

RNU6-100P (RNA, U6 Small Nuclear 100, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-100P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-100P Gene

Genomics for RNU6-100P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU6-100P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J064617 Enhancer 0.6 Ensembl dbSUPER 11.9 +38.8 38808 2.2 FOXA1 ZSCAN4 ZNF24 ZFHX2 SMARCA4 EGR2 RNU6-100P SERTAD2 lnc-SERTAD2-6 piR-49188 AFTPH
GH02J064554 Enhancer 0.2 Ensembl 11.6 -24.1 -24091 0.4 AFTPH RNU6-100P LGALSL-DT ENSG00000237217 LGALSL LOC105374773 MIR4434 SERTAD2
GH02J064562 Enhancer 0.7 Ensembl ENCODE 0.4 -16.3 -16291 2.4 CTCF RAD21 RUNX3 ZNF316 ZBTB40 SMC3 ZNF384 ZNF654 MAFK ARID3A AFTPH LGALSL LGALSL-DT ENSG00000237217 RNU6-100P LOC105374773 MIR4434 SERTAD2
GH02J064534 Promoter 0.8 Ensembl 0.3 -44.2 -44191 0.2 IKZF2 EED RELB RUNX3 ELF1 IKZF1 NR2F1 JUNB IRF4 BATF MIR4434 AFTPH RNU6-100P LOC105374773 SERTAD2
GH02J064565 Enhancer 0.4 Ensembl 0.4 -12.5 -12491 2 TCF7L2 PRDM6 HNF4A GATA2 AFTPH LOC105374773 RNU6-100P MIR4434 SERTAD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-100P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU6-100P Gene

Genomic Locations for RNU6-100P Gene
chr2:64,578,892-64,578,997
(GRCh38/hg38)
Size:
106 bases
Orientation:
Plus strand

Genomic View for RNU6-100P Gene

Genes around RNU6-100P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-100P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-100P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-100P Gene

Proteins for RNU6-100P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-100P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-100P Gene

Domains & Families for RNU6-100P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-100P Gene

Function for RNU6-100P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU6-100P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-100P Gene

Localization for RNU6-100P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-100P Gene

Pathways & Interactions for RNU6-100P Gene

PathCards logo

SuperPathways for RNU6-100P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-100P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU6-100P Gene

Drugs & Compounds for RNU6-100P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-100P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-100P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-100P Gene

No ASD Table

Relevant External Links for RNU6-100P Gene

GeneLoc Exon Structure for
RNU6-100P

Expression for RNU6-100P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU6-100P Gene

mRNA expression in normal human tissues for RNU6-100P Gene
mRNA expression by GTEx for RNU6-100P Gene
genes like me logo Genes that share expression patterns with RNU6-100P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-100P Gene

Orthologs for RNU6-100P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-100P Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
 Mammalia U6 31
  • 73 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia U6 31
  • 67 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Gm24474 31
  • 61 (a)
 ManyToMany
Species where no ortholog for RNU6-100P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU6-100P Gene

ENSEMBL:
Gene Tree for RNU6-100P (if available)
TreeFam:
Gene Tree for RNU6-100P (if available)

Paralogs for RNU6-100P Gene

No data available for Paralogs for RNU6-100P Gene

Variants for RNU6-100P Gene

Additional Variant Information for RNU6-100P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-100P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-100P Gene

Disorders for RNU6-100P Gene

No disorders were found for RNU6-100P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-100P Gene

Publications for RNU6-100P Gene

No publications were found for RNU6-100P Gene.

No data available for Mastermind for RNU6-100P Gene

Products for RNU6-100P Gene

Sources for RNU6-100P Gene