RNU6-1004P Gene (Pseudogene)

RNA, U6 Small Nuclear 1004, Pseudogene

GC12P122438
GIFtS:
7

Aliases for RNU6-1004P Gene

Aliases for RNU6-1004P Gene

  • RNA, U6 Small Nuclear 1004, Pseudogene 2 3 5

External Ids for RNU6-1004P Gene

Previous GeneCards Identifiers for RNU6-1004P Gene

  • GC12P122044
  • GC00U934599
  • GC12P121656
  • GC12P121666
  • GC12P122335
  • GC12P122401
  • GC12P121670
  • GC12P121676
  • GC12P121681
  • GC12P121996
  • GC12P122017
  • GC12P122102
  • GC12P122177
  • GC12P122257

Summaries for RNU6-1004P Gene

GeneCards Summary for RNU6-1004P Gene

RNU6-1004P (RNA, U6 Small Nuclear 1004, Pseudogene) is a Pseudogene.

Additional gene information for RNU6-1004P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU6-1004P Gene

Genomics for RNU6-1004P Gene

GeneHancer (GH) Regulatory Elements for RNU6-1004P Gene

Promoters and enhancers for RNU6-1004P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J121614 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +11.2 11199 2.6 ZNF384 CEBPG TRIM24 ZBTB33 CEBPA ZNF629 ZNF316 OSR2 RUNX3 ZBTB17 KDM2B ENSG00000256742 MORN3 RF00017-1314 RF00026-271 RNU6-1004P lnc-CAMKK2-1
GH12J121609 Enhancer 0.9 Ensembl ENCODE 0.4 +5.9 5899 2 SP7 PRDM1 KLF14 ZIC2 ZBTB8A PRDM10 ZNF512 SP2 NKRF ZNF184 MORN3 LINC01089 RF00026-271 RNU6-1004P RF00017-1314 lnc-CAMKK2-1
GH12J121619 Enhancer 0.8 Ensembl ENCODE 0.4 +15.1 15099 2.8 GTF3C2 SMARCE1 SMARCA4 IKZF1 DPF2 ATF1 PKNOX1 ZNF24 RAD51 FOSL1 KNTC1 ZCCHC8 RSRC2 ENSG00000256742 KDM2B PSMD9 SETD1B ANAPC5 ENSG00000272849 MORN3
GH12J121613 Enhancer 0.5 Ensembl 0.4 +8.8 8799 1 CREM IKZF1 IKZF2 EED BCL11A JUNB BATF FOS ATF2 MORN3 RF00026-271 RNU6-1004P RF00017-1314 lnc-CAMKK2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU6-1004P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU6-1004P Gene

Genomic Locations for RNU6-1004P Gene
chr12:121,604,902-121,605,012
(GRCh38/hg38)
Size:
111 bases
Orientation:
Plus strand

Genomic View for RNU6-1004P Gene

Genes around RNU6-1004P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU6-1004P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU6-1004P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU6-1004P Gene

Proteins for RNU6-1004P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU6-1004P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU6-1004P Gene

Domains & Families for RNU6-1004P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU6-1004P Gene

Function for RNU6-1004P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU6-1004P Gene

Localization for RNU6-1004P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU6-1004P Gene

Pathways & Interactions for RNU6-1004P Gene

PathCards logo

SuperPathways for RNU6-1004P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU6-1004P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU6-1004P Gene

Drugs & Compounds for RNU6-1004P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU6-1004P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU6-1004P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU6-1004P Gene

No ASD Table

Relevant External Links for RNU6-1004P Gene

GeneLoc Exon Structure for
RNU6-1004P
ECgene alternative splicing isoforms for
RNU6-1004P

Expression for RNU6-1004P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU6-1004P Gene

mRNA expression in normal human tissues for RNU6-1004P Gene
mRNA expression by GTEx for RNU6-1004P Gene
genes like me logo Genes that share expression patterns with RNU6-1004P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU6-1004P Gene

Orthologs for RNU6-1004P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU6-1004P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U6 33
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia U6 33 33
  • 69 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm26084 33
  • 66 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia U6 33
  • 64 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia U6 33
  • 59 (a)
 OneToOne
Species where no ortholog for RNU6-1004P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU6-1004P Gene

ENSEMBL:
Gene Tree for RNU6-1004P (if available)
TreeFam:
Gene Tree for RNU6-1004P (if available)

Paralogs for RNU6-1004P Gene

No data available for Paralogs for RNU6-1004P Gene

Variants for RNU6-1004P Gene

Additional Variant Information for RNU6-1004P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU6-1004P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU6-1004P Gene

Disorders for RNU6-1004P Gene

No disorders were found for RNU6-1004P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU6-1004P Gene

Publications for RNU6-1004P Gene

No publications were found for RNU6-1004P Gene.

No data available for External Links for RNU6-1004P Gene

Products for RNU6-1004P Gene

Sources for RNU6-1004P Gene