RNU5F-4P Gene (Pseudogene)

RNA, U5F Small Nuclear 4, Pseudogene

GC12M031594
GIFtS:
8
See more...

Aliases for RNU5F-4P Gene

Aliases for RNU5F-4P Gene

  • RNA, U5F Small Nuclear 4, Pseudogene 2 3 5
  • RNU5F-4P 5

External Ids for RNU5F-4P Gene

Previous GeneCards Identifiers for RNU5F-4P Gene

  • GC00U933126
  • GC12M031748
  • GC12M031752
  • GC12M031755

Summaries for RNU5F-4P Gene

GeneCards Summary for RNU5F-4P Gene

RNU5F-4P (RNA, U5F Small Nuclear 4, Pseudogene) is a Pseudogene.

Additional gene information for RNU5F-4P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU5F-4P Gene

Genomics for RNU5F-4P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU5F-4P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU5F-4P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU5F-4P Gene

Genomic Locations for RNU5F-4P Gene
chr12:31,594,093-31,594,206
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand
chr12:31,747,027-31,747,140
(GRCh37/hg19)
Size:
114 bases
Orientation:
Minus strand

Genomic View for RNU5F-4P Gene

Genes around RNU5F-4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-4P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU5F-4P Gene

Proteins for RNU5F-4P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU5F-4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-4P Gene

Domains & Families for RNU5F-4P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU5F-4P Gene

Function for RNU5F-4P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU5F-4P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-4P Gene

Localization for RNU5F-4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5F-4P Gene

Pathways & Interactions for RNU5F-4P Gene

PathCards logo

SuperPathways for RNU5F-4P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU5F-4P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU5F-4P Gene

Drugs & Compounds for RNU5F-4P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU5F-4P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU5F-4P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-4P Gene

No ASD Table

Relevant External Links for RNU5F-4P Gene

GeneLoc Exon Structure for
RNU5F-4P

Expression for RNU5F-4P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU5F-4P Gene

mRNA expression in normal human tissues for RNU5F-4P Gene
mRNA expression by GTEx for RNU5F-4P Gene
genes like me logo Genes that share expression patterns with RNU5F-4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-4P Gene

Orthologs for RNU5F-4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5F-4P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U5 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia U5 31
  • 72 (a)
 ManyToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia U5 31
  • 57 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves U5 31
  • 61 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia U5 31
  • 72 (a)
 ManyToMany
Species where no ortholog for RNU5F-4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU5F-4P Gene

ENSEMBL:
Gene Tree for RNU5F-4P (if available)
TreeFam:
Gene Tree for RNU5F-4P (if available)

Paralogs for RNU5F-4P Gene

No data available for Paralogs for RNU5F-4P Gene

Variants for RNU5F-4P Gene

Additional Variant Information for RNU5F-4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5F-4P Gene

Disorders for RNU5F-4P Gene

No disorders were found for RNU5F-4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5F-4P Gene

Publications for RNU5F-4P Gene

No publications were found for RNU5F-4P Gene.

No data available for Mastermind for RNU5F-4P Gene

Products for RNU5F-4P Gene

Sources for RNU5F-4P Gene