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Aliases for RNU5F-4P Gene

Subcategory (RNA class) for RNU5F-4P Gene

snRNA

Aliases for RNU5F-4P Gene

  • RNA, U5F Small Nuclear 4, Pseudogene 2 3 5

External Ids for RNU5F-4P Gene

ORGUL Members for RNU5F-4P Gene

Previous GeneCards Identifiers for RNU5F-4P Gene

  • GC00U933126
  • GC12M031748
  • GC12M031752
  • GC12M031755

Summaries for RNU5F-4P Gene

GeneCards Summary for RNU5F-4P Gene

RNU5F-4P (RNA, U5F Small Nuclear 4, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5F-4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-4P Gene

Genomics for RNU5F-4P Gene

GeneHancer (GH) Regulatory Elements for RNU5F-4P Gene

Promoters and enhancers for RNU5F-4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I031594 Enhancer 0.3 ENCODE 550.8 -0.6 -629 1 HLF GC12M031595 RNU5F-4P DENND5B-AS1 RPL31P50
GH12I031316 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 9.8 +272.2 272151 10.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SINHCAF IPO8 FLJ13224 KIAA1551 DDX11 H3F3C DENND5B DENND5B-AS1 RNU5F-4P ENSG00000256176
GH12I031368 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +223.9 223856 3.7 PKNOX1 FOXA2 ARID4B ZNF121 KLF7 ATF7 REST TSHZ1 PPARG GLIS1 LINC02387 DENND5B DENND5B-AS1 RNU5F-4P SINHCAF AK4P3 DDX11 ETFBKMT GC12M031383
GH12I031516 Enhancer 1.3 Ensembl ENCODE dbSUPER 11 +74.9 74884 4.6 FOXA2 ZNF133 SIN3A FEZF1 ZNF2 BRCA1 ZNF121 FOS REST TSHZ1 DENND5B RNU5F-4P DENND5B-AS1 RNU6-618P ETFBKMT AK4P3 GC12M031506 ENSG00000201228 ENSG00000225349
GH12I031524 Enhancer 1.2 Ensembl ENCODE dbSUPER 11 +68.6 68634 2.3 FOXA2 SIN3A BATF IRF4 RARA RFX5 ATF7 RUNX3 CBFB JUNB DENND5B-AS1 RNU5F-4P DENND5B RNU6-618P ETFBKMT AK4P3 ENSG00000225349 ENSG00000201228 GC12M031506
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5F-4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5F-4P Gene

Genomic Locations for RNU5F-4P Gene
chr12:31,594,093-31,594,206
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand
chr12:31,747,027-31,747,140
(GRCh37/hg19)

Genomic View for RNU5F-4P Gene

Genes around RNU5F-4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5F-4P Gene

Proteins for RNU5F-4P Gene

Post-translational modifications for RNU5F-4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-4P Gene

Domains & Families for RNU5F-4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-4P Gene

Function for RNU5F-4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-4P Gene

Localization for RNU5F-4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5F-4P Gene

Pathways & Interactions for RNU5F-4P Gene

SuperPathways for RNU5F-4P Gene

No Data Available

Interacting Proteins for RNU5F-4P Gene

Gene Ontology (GO) - Biological Process for RNU5F-4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5F-4P Gene

Drugs & Compounds for RNU5F-4P Gene

No Compound Related Data Available

Transcripts for RNU5F-4P Gene

mRNA/cDNA for RNU5F-4P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-4P Gene

No ASD Table

Relevant External Links for RNU5F-4P Gene

GeneLoc Exon Structure for
RNU5F-4P
ECgene alternative splicing isoforms for
RNU5F-4P

Expression for RNU5F-4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5F-4P Gene

genes like me logo Genes that share expression patterns with RNU5F-4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-4P Gene

Orthologs for RNU5F-4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5F-4P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 34
  • 72 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 34
  • 57 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U5 34
  • 61 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 34
  • 72 (a)
ManyToMany
Species where no ortholog for RNU5F-4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5F-4P Gene

ENSEMBL:
Gene Tree for RNU5F-4P (if available)
TreeFam:
Gene Tree for RNU5F-4P (if available)

Paralogs for RNU5F-4P Gene

No data available for Paralogs for RNU5F-4P Gene

Variants for RNU5F-4P Gene

Additional Variant Information for RNU5F-4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5F-4P Gene

Disorders for RNU5F-4P Gene

No disorders were found for RNU5F-4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5F-4P Gene

Publications for RNU5F-4P Gene

No publications were found for RNU5F-4P Gene.

Products for RNU5F-4P Gene

Sources for RNU5F-4P Gene

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