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RNU5F-2P Gene(Pseudogene)

RNA, U5F Small Nuclear 2, Pseudogene

GCID:
GC01P179576
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RNU5F-2P Gene

Subcategory (RNA class) for RNU5F-2P Gene

snRNA

Aliases for RNU5F-2P Gene

  • RNA, U5F Small Nuclear 2, Pseudogene 2 3 5

External Ids for RNU5F-2P Gene

ORGUL Members for RNU5F-2P Gene

Previous GeneCards Identifiers for RNU5F-2P Gene

  • GC00U933988
  • GC01P179546

Summaries for RNU5F-2P Gene

GeneCards Summary for RNU5F-2P Gene

RNU5F-2P (RNA, U5F Small Nuclear 2, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5F-2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5F-2P Gene

Genomics for RNU5F-2P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RNU5F-2P Gene

Promoters and enhancers for RNU5F-2P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I179575 Promoter 0.7 EPDnew 550.8 -0.3 -305 0.1 CTCF SUZ12 EZH2 GC01P179577 NPHS2 RNU5F-2P TDRD5 PIRC5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5F-2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5F-2P Gene

Genomic Locations for RNU5F-2P Gene
chr1:179,576,268-179,576,349
(GRCh38/hg38)
Size:
82 bases
Orientation:
Plus strand
chr1:179,545,403-179,545,484
(GRCh37/hg19)

Genomic View for RNU5F-2P Gene

Genes around RNU5F-2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5F-2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5F-2P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU5F-2P Gene

Proteins for RNU5F-2P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU5F-2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5F-2P Gene

Domains & Families for RNU5F-2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5F-2P Gene

Function for RNU5F-2P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5F-2P Gene

Localization for RNU5F-2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5F-2P Gene

Pathways & Interactions for RNU5F-2P Gene

SuperPathways for RNU5F-2P Gene

PathCards logo More details on SuperPathways for RNU5F-2P
No Data Available

Interacting Proteins for RNU5F-2P Gene

Gene Ontology (GO) - Biological Process for RNU5F-2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5F-2P Gene

Drugs & Compounds for RNU5F-2P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU5F-2P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU5F-2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5F-2P Gene

No ASD Table

Relevant External Links for RNU5F-2P Gene

GeneLoc Exon Structure for
RNU5F-2P
ECgene alternative splicing isoforms for
RNU5F-2P

Expression for RNU5F-2P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5F-2P Gene

mRNA expression in normal human tissues for RNU5F-2P Gene
mRNA expression by GTEx for RNU5F-2P Gene
genes like me logo Genes that share expression patterns with RNU5F-2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5F-2P Gene

Orthologs for RNU5F-2P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU5F-2P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U5 34
  • 99 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm22265 34
  • 54 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia U5 34 34 34
  • 50 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia U5 34
  • 46 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U5 34
  • 44 (a)
 OneToOne
Species where no ortholog for RNU5F-2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5F-2P Gene

ENSEMBL:
Gene Tree for RNU5F-2P (if available)
TreeFam:
Gene Tree for RNU5F-2P (if available)

Paralogs for RNU5F-2P Gene

No data available for Paralogs for RNU5F-2P Gene

Variants for RNU5F-2P Gene

Additional Variant Information for RNU5F-2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5F-2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5F-2P Gene

Disorders for RNU5F-2P Gene

No disorders were found for RNU5F-2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5F-2P Gene

Publications for RNU5F-2P Gene

No publications were found for RNU5F-2P Gene.

Products for RNU5F-2P Gene

Sources for RNU5F-2P Gene

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