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Aliases for RNU5E-3P Gene

Aliases for RNU5E-3P Gene

  • RNA, U5E Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU5E-3P Gene

Previous GeneCards Identifiers for RNU5E-3P Gene

  • GC00U933651

Summaries for RNU5E-3P Gene

GeneCards Summary for RNU5E-3P Gene

RNU5E-3P (RNA, U5E Small Nuclear 3, Pseudogene) is a Pseudogene.

Additional gene information for RNU5E-3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5E-3P Gene

Genomics for RNU5E-3P Gene

GeneHancer (GH) Regulatory Elements for RNU5E-3P Gene

Promoters and enhancers for RNU5E-3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I048600 Enhancer 0.6 ENCODE 12.9 -28.7 -28672 4.6 SOX5 SOX13 FOXA2 SAP130 FOXA3 REST ELF1 FOXA1 HNF1A BCL6 RNU5E-3P FRYL OCIAD1 OCIAD1-AS1 SLC10A4 NFXL1 GC04P048658
GH04I048578 Enhancer 0.7 ENCODE 0.8 -4.0 -4049 0.1 HDGF CTCF ARNT ARID4B CEBPG RAD21 CC2D1A ARID2 BRD9 ZNF143 OCIAD2 ZAR1 OCIAD1-AS1 RNU5E-3P GC04P048658 FRYL
GH04I048569 Enhancer 0.5 ENCODE 0.8 +3.8 3773 1.6 MITF RCOR1 FOS CHD2 OCIAD1 RNU5E-3P ZAR1 FRYL
GH04I048489 Promoter/Enhancer 1 EPDnew Ensembl 0.2 +83.9 83934 2.1 MBD1 SPI1 CHAMP1 EZH2 ZAR1 OCIAD1 SLC10A4 ENSG00000259959 RNU5E-3P
GH04I048653 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -79.2 -79216 1.1 JUNB ZIC2 OSR2 ZNF316 JUND GLIS1 HMBOX1 EMSY MAFK ZBTB17 GC04P048658 RNU5E-3P FRYL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5E-3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5E-3P Gene

Genomic Locations for RNU5E-3P Gene
chr4:48,574,453-48,574,520
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand
chr4:48,576,470-48,576,537
(GRCh37/hg19)

Genomic View for RNU5E-3P Gene

Genes around RNU5E-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-3P Gene

Proteins for RNU5E-3P Gene

Post-translational modifications for RNU5E-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-3P Gene

Domains & Families for RNU5E-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5E-3P Gene

Function for RNU5E-3P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-3P Gene

Localization for RNU5E-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5E-3P Gene

Pathways & Interactions for RNU5E-3P Gene

SuperPathways for RNU5E-3P Gene

No Data Available

Interacting Proteins for RNU5E-3P Gene

Gene Ontology (GO) - Biological Process for RNU5E-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5E-3P Gene

Drugs & Compounds for RNU5E-3P Gene

No Compound Related Data Available

Transcripts for RNU5E-3P Gene

mRNA/cDNA for RNU5E-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-3P Gene

No ASD Table

Relevant External Links for RNU5E-3P Gene

GeneLoc Exon Structure for
RNU5E-3P
ECgene alternative splicing isoforms for
RNU5E-3P

Expression for RNU5E-3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5E-3P Gene

genes like me logo Genes that share expression patterns with RNU5E-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-3P Gene

Orthologs for RNU5E-3P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-3P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 34
  • 55 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23102 34
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U5 34
  • 47 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U5 34
  • 41 (a)
OneToOne
chicken
(Gallus gallus)
Aves U5 34
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U5 34
  • 47 (a)
ManyToMany
Species where no ortholog for RNU5E-3P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-3P Gene

ENSEMBL:
Gene Tree for RNU5E-3P (if available)
TreeFam:
Gene Tree for RNU5E-3P (if available)

Paralogs for RNU5E-3P Gene

No data available for Paralogs for RNU5E-3P Gene

Variants for RNU5E-3P Gene

Additional Variant Information for RNU5E-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5E-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-3P Gene

Disorders for RNU5E-3P Gene

No disorders were found for RNU5E-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5E-3P Gene

Publications for RNU5E-3P Gene

No publications were found for RNU5E-3P Gene.

Products for RNU5E-3P Gene

Sources for RNU5E-3P Gene

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