Aliases for RNU5E-1 Gene

Subcategory (RNA class) for RNU5E-1 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RNU5E-1 Gene

  • RNA, U5E Small Nuclear 1 2 3 5
  • RNU5E-1 2 5
  • U5E 2 3
  • RNA, U5E Small Nuclear 2
  • RF00020 168
  • RNU5E 3

External Ids for RNU5E-1 Gene

Previous HGNC Symbols for RNU5E-1 Gene

  • RNU5E

Previous GeneCards Identifiers for RNU5E-1 Gene

  • GC01P011970

Summaries for RNU5E-1 Gene

GeneCards Summary for RNU5E-1 Gene

RNU5E-1 (RNA, U5E Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RNU5E-1 Gene

Additional gene information for RNU5E-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-1 Gene

Genomics for RNU5E-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU5E-1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU5E-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU5E-1 Gene

Genomic Locations for RNU5E-1 Gene
chr1:11,908,152-11,908,272
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand
chr1:11,968,209-11,968,329
(GRCh37/hg19)
Size:
121 bases
Orientation:
Plus strand

Genomic View for RNU5E-1 Gene

Genes around RNU5E-1 on UCSC Golden Path with GeneCards custom track
RNU5E-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RNU5E-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-1 Gene

Proteins for RNU5E-1 Gene

Post-translational modifications for RNU5E-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-1 Gene

Domains & Families for RNU5E-1 Gene

Gene Families for RNU5E-1 Gene

genes like me logo Genes that share domains with RNU5E-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU5E-1 Gene

Function for RNU5E-1 Gene

Phenotypes From GWAS Catalog for RNU5E-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-1 Gene

Localization for RNU5E-1 Gene

Gene Ontology (GO) - Cellular Components for RNU5E-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005682 U5 snRNP IEA --
GO:0046540 U4/U6 x U5 tri-snRNP complex IEA --
genes like me logo Genes that share ontologies with RNU5E-1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RNU5E-1 Gene

Pathways & Interactions for RNU5E-1 Gene

PathCards logo

SuperPathways for RNU5E-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU5E-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000244 spliceosomal tri-snRNP complex assembly IEA --
GO:0000353 formation of quadruple SL/U4/U5/U6 snRNP IEA --
genes like me logo Genes that share ontologies with RNU5E-1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU5E-1 Gene

Drugs & Compounds for RNU5E-1 Gene

No Compound Related Data Available

Transcripts for RNU5E-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RNU5E-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000673862_9606 snRNA 120 2

Ensembl: ENST00000362477 (view in UCSC) ,

Rfam: RF00020,

URS000075DD00_9606 snRNA 119 2

HGNC: 10215,

RefSeq: NR_002754,

RNU5E-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RNU5E-1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-1 Gene

No ASD Table

Relevant External Links for RNU5E-1 Gene

GeneLoc Exon Structure for
RNU5E-1

Expression for RNU5E-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU5E-1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RNU5E-1

genes like me logo Genes that share expression patterns with RNU5E-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-1 Gene

Orthologs for RNU5E-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U5 31
  • 92 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24871 31
  • 91 (a)
ManyToMany
Gm25099 31
  • 89 (a)
ManyToMany
Gm23287 31
  • 88 (a)
ManyToMany
Gm23143 31
  • 87 (a)
ManyToMany
Dog
(Canis familiaris)
Mammalia U5 31
  • 90 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U5 31
  • 89 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia U5 31
  • 88 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U5 31
  • 87 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia U5 31
  • 81 (a)
ManyToMany
Species where no ortholog for RNU5E-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU5E-1 Gene

ENSEMBL:
Gene Tree for RNU5E-1 (if available)
TreeFam:
Gene Tree for RNU5E-1 (if available)

Paralogs for RNU5E-1 Gene

No data available for Paralogs for RNU5E-1 Gene

Variants for RNU5E-1 Gene

Additional dbSNP identifiers (rs#s) for RNU5E-1 Gene

Additional Variant Information for RNU5E-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5E-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-1 Gene

Disorders for RNU5E-1 Gene

Additional Disease Information for RNU5E-1

No disorders were found for RNU5E-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5E-1 Gene

Publications for RNU5E-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer EJ … Steitz JA (Molecular and cellular biology 1992) 2 3

Products for RNU5E-1 Gene

Sources for RNU5E-1 Gene