Aliases for RNU5E-1 Gene

Subcategory (RNA class) for RNU5E-1 Gene

snRNA

Quality Score for this RNA gene is

13

Aliases for RNU5E-1 Gene

  • RNA, U5E Small Nuclear 1 2 3 5
  • RNA, U5E Small Nuclear 2
  • RNU5E-1 2
  • RF00020 174
  • RNU5E 3
  • U5E 3

External Ids for RNU5E-1 Gene

Previous HGNC Symbols for RNU5E-1 Gene

  • RNU5E

Previous GeneCards Identifiers for RNU5E-1 Gene

  • GC01P011970

Summaries for RNU5E-1 Gene

GeneCards Summary for RNU5E-1 Gene

RNU5E-1 (RNA, U5E Small Nuclear 1) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RNU5E-1 Gene

Additional gene information for RNU5E-1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNU5E-1 Gene

Genomics for RNU5E-1 Gene

GeneHancer (GH) Regulatory Elements for RNU5E-1 Gene

Promoters and enhancers for RNU5E-1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU5E-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5E-1 Gene

Genomic Locations for RNU5E-1 Gene
chr1:11,908,152-11,908,272
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand
chr1:11,968,209-11,968,329
(GRCh37/hg19)
Size:
121 bases
Orientation:
Plus strand

Genomic View for RNU5E-1 Gene

Genes around RNU5E-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5E-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5E-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5E-1 Gene

Proteins for RNU5E-1 Gene

Post-translational modifications for RNU5E-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5E-1 Gene

Domains & Families for RNU5E-1 Gene

Gene Families for RNU5E-1 Gene

genes like me logo Genes that share domains with RNU5E-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU5E-1 Gene

Function for RNU5E-1 Gene

Phenotypes From GWAS Catalog for RNU5E-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5E-1 Gene

Localization for RNU5E-1 Gene

Gene Ontology (GO) - Cellular Components for RNU5E-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005682 U5 snRNP IEA --
GO:0046540 U4/U6 x U5 tri-snRNP complex IEA --
genes like me logo Genes that share ontologies with RNU5E-1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RNU5E-1 Gene

Pathways & Interactions for RNU5E-1 Gene

PathCards logo

SuperPathways for RNU5E-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU5E-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000244 spliceosomal tri-snRNP complex assembly IEA --
GO:0000353 formation of quadruple SL/U4/U5/U6 snRNP IEA --
genes like me logo Genes that share ontologies with RNU5E-1: view

No data available for Pathways by source and SIGNOR curated interactions for RNU5E-1 Gene

Drugs & Compounds for RNU5E-1 Gene

No Compound Related Data Available

Transcripts for RNU5E-1 Gene

mRNA/cDNA for RNU5E-1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) Rfam transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5E-1 Gene

No ASD Table

Relevant External Links for RNU5E-1 Gene

GeneLoc Exon Structure for
RNU5E-1
ECgene alternative splicing isoforms for
RNU5E-1

Expression for RNU5E-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5E-1 Gene

genes like me logo Genes that share expression patterns with RNU5E-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5E-1 Gene

Orthologs for RNU5E-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5E-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 33
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24871 33
  • 91 (a)
ManyToMany
Gm25099 33
  • 89 (a)
ManyToMany
Gm23287 33
  • 88 (a)
ManyToMany
Gm23143 33
  • 87 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U5 33
  • 90 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U5 33
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U5 33
  • 88 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U5 33
  • 87 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U5 33
  • 81 (a)
ManyToMany
Species where no ortholog for RNU5E-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5E-1 Gene

ENSEMBL:
Gene Tree for RNU5E-1 (if available)
TreeFam:
Gene Tree for RNU5E-1 (if available)

Paralogs for RNU5E-1 Gene

No data available for Paralogs for RNU5E-1 Gene

Variants for RNU5E-1 Gene

Sequence variations from dbSNP and Humsavar for RNU5E-1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000708583 -- 11,906,307(+) G/A upstream_transcript_variant
rs1000983372 -- 11,908,391(+) T/C downstream_transcript_variant
rs1003881665 -- 11,908,311(+) T/A/C downstream_transcript_variant
rs1004042951 -- 11,906,528(+) C/G upstream_transcript_variant
rs1004844177 -- 11,908,489(+) A/G downstream_transcript_variant

Additional Variant Information for RNU5E-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5E-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5E-1 Gene

Disorders for RNU5E-1 Gene

Additional Disease Information for RNU5E-1

No disorders were found for RNU5E-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5E-1 Gene

Publications for RNU5E-1 Gene

  1. Three novel functional variants of human U5 small nuclear RNA. (PMID: 1310151) Sontheimer EJ … Steitz JA (Molecular and cellular biology 1992) 2 3 56

Products for RNU5E-1 Gene

Sources for RNU5E-1 Gene