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Aliases for RNU5B-6P Gene

Aliases for RNU5B-6P Gene

  • RNA, U5B Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU5B-6P Gene

Previous GeneCards Identifiers for RNU5B-6P Gene

  • GC10U901026
  • GC10M110944

Summaries for RNU5B-6P Gene

GeneCards Summary for RNU5B-6P Gene

RNU5B-6P (RNA, U5B Small Nuclear 6, Pseudogene) is a Pseudogene.

Additional gene information for RNU5B-6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5B-6P Gene

Genomics for RNU5B-6P Gene

GeneHancer (GH) Regulatory Elements for RNU5B-6P Gene

Promoters and enhancers for RNU5B-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I109187 Enhancer 0.3 ENCODE 0.8 -2.7 -2741 0.1 FOS RNU6-839P RNU5B-6P GC10P109240
GH10I109205 Enhancer 0.6 ENCODE 0.3 -21.5 -21466 2.1 USF1 JUNB EBF1 JUND POLR2A BCL11A FOS MAFK RUNX3 RNU6-839P RNU5B-6P GC10P109240
GH10I109156 Enhancer 0.2 ENCODE 0.3 +28.5 28509 0.2 RNU5B-6P PIR55958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5B-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5B-6P Gene

Genomic Locations for RNU5B-6P Gene
chr10:109,184,830-109,185,107
(GRCh38/hg38)
Size:
278 bases
Orientation:
Minus strand
chr10:110,944,651-110,944,765
(GRCh37/hg19)

Genomic View for RNU5B-6P Gene

Genes around RNU5B-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5B-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5B-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5B-6P Gene

Proteins for RNU5B-6P Gene

Post-translational modifications for RNU5B-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5B-6P Gene

Domains & Families for RNU5B-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5B-6P Gene

Function for RNU5B-6P Gene

Phenotypes From GWAS Catalog for RNU5B-6P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5B-6P Gene

Localization for RNU5B-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5B-6P Gene

Pathways & Interactions for RNU5B-6P Gene

SuperPathways for RNU5B-6P Gene

No Data Available

Interacting Proteins for RNU5B-6P Gene

Gene Ontology (GO) - Biological Process for RNU5B-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5B-6P Gene

Drugs & Compounds for RNU5B-6P Gene

No Compound Related Data Available

Transcripts for RNU5B-6P Gene

mRNA/cDNA for RNU5B-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5B-6P Gene

No ASD Table

Relevant External Links for RNU5B-6P Gene

GeneLoc Exon Structure for
RNU5B-6P
ECgene alternative splicing isoforms for
RNU5B-6P

Expression for RNU5B-6P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5B-6P Gene

Orthologs for RNU5B-6P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5B-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U5 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U5 34
  • 72 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U5 34
  • 57 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U5 34
  • 55 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U5 34
  • 70 (a)
ManyToMany
Species where no ortholog for RNU5B-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU5B-6P Gene

ENSEMBL:
Gene Tree for RNU5B-6P (if available)
TreeFam:
Gene Tree for RNU5B-6P (if available)

Paralogs for RNU5B-6P Gene

No data available for Paralogs for RNU5B-6P Gene

Variants for RNU5B-6P Gene

Additional Variant Information for RNU5B-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5B-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5B-6P Gene

Disorders for RNU5B-6P Gene

Additional Disease Information for RNU5B-6P

Genetic Association Database
(GAD)

No disorders were found for RNU5B-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU5B-6P Gene

Publications for RNU5B-6P Gene

No publications were found for RNU5B-6P Gene.

Products for RNU5B-6P Gene

Sources for RNU5B-6P Gene

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