Aliases for RNU5B-5P Gene

Aliases for RNU5B-5P Gene

  • RNA, U5B Small Nuclear 5, Pseudogene 2 3
  • RNA, U5B Small Nuclear Pseudogene 5 3

External Ids for RNU5B-5P Gene

Previous GeneCards Identifiers for RNU5B-5P Gene

  • GC09U901009
  • GC09P128188
  • GC09P097800

Summaries for RNU5B-5P Gene

GeneCards Summary for RNU5B-5P Gene

RNU5B-5P (RNA, U5B Small Nuclear 5, Pseudogene) is a Pseudogene.

Additional gene information for RNU5B-5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU5B-5P Gene

Genomics for RNU5B-5P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU5B-5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J125427 Enhancer 0.4 ENCODE 250.7 +1.9 1948 0.2 CTCF ZBTB33 ZNF24 RNU5B-5P LOC112268055 HSALNG0074402 ENSG00000287782 GAPVD1 MAPKAP1
GH09J125428 Enhancer 0.7 ENCODE 0.7 +2.4 2368 0.2 TBP ZNF217 CTCF REST VEZF1 TRIM22 SMC3 RAD21 MAZ ZNF48 LOC112268055 RNU5B-5P HSALNG0074402 ENSG00000287782 GAPVD1 MAPKAP1
GH09J125433 Enhancer 0.5 Ensembl 0.4 +8.2 8211 0.4 ZBTB33 ZMYM3 GATA2 KDM1A CHD2 BCOR HSALNG0074402 RNU5B-5P LOC112268055 ENSG00000287782 GAPVD1 MAPKAP1
GH09J125431 Enhancer 0.4 Ensembl 0.4 +6.2 6212 0.8 CTCF RAD21 ZNF548 ZNF687 GAPVD1 PRPS1P2 GOLGA1 PBX3 HSALNG0074402 RNU5B-5P LOC112268055 ENSG00000287782 MAPKAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU5B-5P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU5B-5P Gene

Latest Assembly
chr9:125,425,789-125,425,876
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand

Previous Assembly
chr9:128,188,068-128,188,155
(GRCh37/hg19 by Entrez Gene)
Size:
88 bases
Orientation:
Plus strand

Genomic View for RNU5B-5P Gene

Genes around RNU5B-5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5B-5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5B-5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5B-5P Gene

Proteins for RNU5B-5P Gene

Post-translational modifications for RNU5B-5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5B-5P Gene

Domains & Families for RNU5B-5P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU5B-5P Gene

Function for RNU5B-5P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5B-5P Gene

Localization for RNU5B-5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5B-5P Gene

Pathways & Interactions for RNU5B-5P Gene

PathCards logo

SuperPathways for RNU5B-5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU5B-5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU5B-5P Gene

Drugs & Compounds for RNU5B-5P Gene

No Compound Related Data Available

Transcripts for RNU5B-5P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5B-5P Gene

No ASD Table

Relevant External Links for RNU5B-5P Gene

GeneLoc Exon Structure for
RNU5B-5P

No data available for mRNA/cDNA for RNU5B-5P Gene

Expression for RNU5B-5P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5B-5P Gene

Orthologs for RNU5B-5P Gene

No data available for Orthologs and Evolution for RNU5B-5P Gene

Paralogs for RNU5B-5P Gene

No data available for Paralogs for RNU5B-5P Gene

Variants for RNU5B-5P Gene

Additional Variant Information for RNU5B-5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5B-5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5B-5P Gene

Disorders for RNU5B-5P Gene

No disorders were found for RNU5B-5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5B-5P Gene

Publications for RNU5B-5P Gene

No publications were found for RNU5B-5P Gene.

No data available for Mastermind for RNU5B-5P Gene

Products for RNU5B-5P Gene

Sources for RNU5B-5P Gene