Aliases for RNU5A-7P Gene

Aliases for RNU5A-7P Gene

  • RNA, U5A Small Nuclear 7, Pseudogene 2 3 5
  • RNU5A-7P 5

External Ids for RNU5A-7P Gene

Previous GeneCards Identifiers for RNU5A-7P Gene

  • GC00U933271
  • GC12M064623

Summaries for RNU5A-7P Gene

GeneCards Summary for RNU5A-7P Gene

RNU5A-7P (RNA, U5A Small Nuclear 7, Pseudogene) is a Pseudogene.

Additional gene information for RNU5A-7P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU5A-7P Gene

Genomics for RNU5A-7P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU5A-7P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J064236 Enhancer 0.6 Ensembl 0.4 -8.2 -8225 1.4 CEBPA CTCF FOXA2 RAD21 SMC3 FOXP1 SOX5 FOXA1 TFAP4 SOX13 ENSG00000255629 RF00020-009 RNU5A-7P ENSG00000243024 KICS2 lnc-XPOT-4 OOEPP2 C12orf56
GH12J064257 Enhancer 0.7 Ensembl ENCODE 0.3 -27.7 -27654 0.7 ZNF654 REST TRIM22 CTCF RAD21 CUX1 SMC3 ZNF362 ARID3A ZNF660 KICS2 ENSG00000243024 RNU6-1009P ENSG00000255629 OOEPP2 RF00020-009 RNU5A-7P lnc-XPOT-4 C12orf56
GH12J064252 Enhancer 0.6 Ensembl ENCODE 0.4 -24.2 -24225 1.8 CEBPB ZNF133 ZSCAN4 CEBPG KICS2 ENSG00000243024 RNU6-1009P XPOT ENSG00000255629 C12orf56 OOEPP2 RF00020-009 RNU5A-7P lnc-XPOT-4
GH12J064225 Enhancer 0.3 Ensembl 0.7 +2.9 2874 1.2 ATF2 RNU6-1009P C12orf56 ENSG00000243024 KICS2 RNU5A-7P RF00020-009 lnc-XPOT-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU5A-7P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU5A-7P Gene

Latest Assembly
chr12:64,228,560-64,228,675
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Previous Assembly
chr12:64,622,340-64,622,455
(GRCh37/hg19 by Entrez Gene)
Size:
116 bases
Orientation:
Minus strand

chr12:64,622,340-64,622,455
(GRCh37/hg19 by Ensembl)
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNU5A-7P Gene

Genes around RNU5A-7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-7P Gene

Proteins for RNU5A-7P Gene

Post-translational modifications for RNU5A-7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-7P Gene

Domains & Families for RNU5A-7P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU5A-7P Gene

Function for RNU5A-7P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-7P Gene

Localization for RNU5A-7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5A-7P Gene

Pathways & Interactions for RNU5A-7P Gene

PathCards logo

SuperPathways for RNU5A-7P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU5A-7P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU5A-7P Gene

Drugs & Compounds for RNU5A-7P Gene

No Compound Related Data Available

Transcripts for RNU5A-7P Gene

mRNA/cDNA for RNU5A-7P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-7P Gene

No ASD Table

Relevant External Links for RNU5A-7P Gene

GeneLoc Exon Structure for
RNU5A-7P

Expression for RNU5A-7P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU5A-7P Gene

genes like me logo Genes that share expression patterns with RNU5A-7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5A-7P Gene

Orthologs for RNU5A-7P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU5A-7P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U5 30
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U5 30
  • 59 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U5 30
  • 70 (a)
OneToMany
Species where no ortholog for RNU5A-7P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU5A-7P Gene

ENSEMBL:
Gene Tree for RNU5A-7P (if available)
TreeFam:
Gene Tree for RNU5A-7P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU5A-7P

Paralogs for RNU5A-7P Gene

No data available for Paralogs for RNU5A-7P Gene

Variants for RNU5A-7P Gene

Additional Variant Information for RNU5A-7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-7P
Leiden Open Variation Database (LOVD)
RNU5A-7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-7P Gene

Disorders for RNU5A-7P Gene

No disorders were found for RNU5A-7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-7P Gene

Publications for RNU5A-7P Gene

No publications were found for RNU5A-7P Gene.

No data available for Mastermind for RNU5A-7P Gene

Products for RNU5A-7P Gene

Sources for RNU5A-7P Gene