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Aliases for RNU5A-3P Gene

Subcategory (RNA class) for RNU5A-3P Gene

snRNA

Aliases for RNU5A-3P Gene

  • RNA, U5A Small Nuclear 3, Pseudogene 2 3 5

External Ids for RNU5A-3P Gene

ORGUL Members for RNU5A-3P Gene

Previous GeneCards Identifiers for RNU5A-3P Gene

  • GC00U933318
  • GC08P030503
  • GC08P030505

Summaries for RNU5A-3P Gene

GeneCards Summary for RNU5A-3P Gene

RNU5A-3P (RNA, U5A Small Nuclear 3, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU5A-3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU5A-3P Gene

Genomics for RNU5A-3P Gene

GeneHancer (GH) Regulatory Elements for RNU5A-3P Gene

Promoters and enhancers for RNU5A-3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I030643 Promoter 0.8 EPDnew 550.8 0.0 -19 0.1 BCOR ZNF121 ATF4 CEBPG ZBTB33 ZNF24 GC08P030645 RNU5A-3P SMIM18 GTF2E2
GH08I030742 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.1 +100.5 100453 2.5 PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B UBXN8 GC08M030742 LOC105379355 WRN GTF2E2 RPS15AP24 PPP2CB RNU5A-3P GSR
GH08I030545 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.9 -94.0 -93986 8.2 PKNOX1 FOXA2 ZFP64 ARID4B DMAP1 ZNF48 YY1 ATF7 RXRA SP5 PIR40668 RBPMS-AS1 RBPMS ENSG00000253112 RNU5A-3P GTF2E2 SMIM18 ENSG00000279041 PIR38894 PIR31328
GH08I030616 Enhancer 0.9 ENCODE 11.3 -26.7 -26693 1.2 ELF3 PKNOX1 FOXA2 ARID4B DMAP1 THRB RAD21 RARA YY1 CREM SMIM18 ENSG00000253112 RNU5A-3P GTF2E2
GH08I030496 Enhancer 0.9 Ensembl ENCODE dbSUPER 9.6 -146.2 -146244 1.7 BCL11A NR2F1 JUNB BATF IKZF2 RUNX3 RELA RBPMS RBPMS-AS1 RNU5A-3P GTF2E2 PIR31328
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU5A-3P Gene

Genomic Locations for RNU5A-3P Gene
chr8:30,643,689-30,643,802
(GRCh38/hg38)
Size:
114 bases
Orientation:
Plus strand
chr8:30,501,206-30,501,319
(GRCh37/hg19)

Genomic View for RNU5A-3P Gene

Genes around RNU5A-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU5A-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU5A-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU5A-3P Gene

Proteins for RNU5A-3P Gene

Post-translational modifications for RNU5A-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU5A-3P Gene

Domains & Families for RNU5A-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU5A-3P Gene

Function for RNU5A-3P Gene

Phenotypes From GWAS Catalog for RNU5A-3P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU5A-3P Gene

Localization for RNU5A-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU5A-3P Gene

Pathways & Interactions for RNU5A-3P Gene

SuperPathways for RNU5A-3P Gene

No Data Available

Interacting Proteins for RNU5A-3P Gene

Gene Ontology (GO) - Biological Process for RNU5A-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU5A-3P Gene

Drugs & Compounds for RNU5A-3P Gene

No Compound Related Data Available

Transcripts for RNU5A-3P Gene

mRNA/cDNA for RNU5A-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU5A-3P Gene

No ASD Table

Relevant External Links for RNU5A-3P Gene

GeneLoc Exon Structure for
RNU5A-3P
ECgene alternative splicing isoforms for
RNU5A-3P

Expression for RNU5A-3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU5A-3P Gene

genes like me logo Genes that share expression patterns with RNU5A-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU5A-3P Gene

Orthologs for RNU5A-3P Gene

Evolution for RNU5A-3P Gene

ENSEMBL:
Gene Tree for RNU5A-3P (if available)
TreeFam:
Gene Tree for RNU5A-3P (if available)

No data available for Orthologs for RNU5A-3P Gene

Paralogs for RNU5A-3P Gene

No data available for Paralogs for RNU5A-3P Gene

Variants for RNU5A-3P Gene

Additional Variant Information for RNU5A-3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU5A-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU5A-3P Gene

Disorders for RNU5A-3P Gene

No disorders were found for RNU5A-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU5A-3P Gene

Publications for RNU5A-3P Gene

No publications were found for RNU5A-3P Gene.

Products for RNU5A-3P Gene

Sources for RNU5A-3P Gene

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