Aliases for RNU4ATAC9P Gene

Aliases for RNU4ATAC9P Gene

  • RNA, U4atac Small Nuclear 9, Pseudogene 2 3 5
  • RNU4ATAC9P 5

External Ids for RNU4ATAC9P Gene

Previous GeneCards Identifiers for RNU4ATAC9P Gene

  • GC04P073836

Summaries for RNU4ATAC9P Gene

GeneCards Summary for RNU4ATAC9P Gene

RNU4ATAC9P (RNA, U4atac Small Nuclear 9, Pseudogene) is a Pseudogene.

Additional gene information for RNU4ATAC9P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4ATAC9P Gene

Genomics for RNU4ATAC9P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4ATAC9P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J072971 Enhancer 0.7 Ensembl ENCODE 0.4 +6.1 6130 2.6 HMBOX1 JUND FOS FOSL1 FOSL2 YY1 JUN POLR2A RNU6ATAC5P RNU4ATAC9P RF00618-010 LOC105377273 LOC107986286 HSALNG0035116 COX18 ADAMTS3
GH04J072974 Enhancer 0.6 Ensembl 0.4 +9.7 9723 2.2 PKNOX1 POLR2A TCF7L2 OSR2 NR2F1 SPI1 MAFK JUND NR2F6 ZNF843 ENSG00000250220 RNU4ATAC9P RF00618-010 HSALNG0035116 LOC107986286 LOC105377273 COX18 ADAMTS3
GH04J072983 Enhancer 0.4 Ensembl 0.4 +18.9 18923 1.4 FOXA2 NANOG POU5F1 RNU6ATAC5P HSALNG0035116 LOC107986286 RF00618-010 RNU4ATAC9P LOC105377273 COX18 ADAMTS3
GH04J072969 Enhancer 0.2 Ensembl 0.7 +4.5 4523 0.2 RNU6ATAC5P RNU4ATAC9P RF00618-010 LOC105377273 LOC107986286 HSALNG0035116 COX18 ADAMTS3
GH04J072978 Enhancer 0.3 Ensembl 0.4 +13.1 13122 0.6 FOSL1 RNU6ATAC5P ENSG00000221639 RF00618-010 RNU4ATAC9P HSALNG0035116 LOC107986286 LOC105377273 COX18 ADAMTS3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4ATAC9P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4ATAC9P Gene

Genomic Locations for RNU4ATAC9P Gene
chr4:72,965,178-72,965,303
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr4:73,830,895-73,831,020
(GRCh37/hg19)
Size:
126 bases
Orientation:
Plus strand

Genomic View for RNU4ATAC9P Gene

Genes around RNU4ATAC9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC9P Gene

Proteins for RNU4ATAC9P Gene

Post-translational modifications for RNU4ATAC9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC9P Gene

Domains & Families for RNU4ATAC9P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4ATAC9P Gene

Function for RNU4ATAC9P Gene

Phenotypes From GWAS Catalog for RNU4ATAC9P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC9P Gene

Localization for RNU4ATAC9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC9P Gene

Pathways & Interactions for RNU4ATAC9P Gene

PathCards logo

SuperPathways for RNU4ATAC9P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4ATAC9P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4ATAC9P Gene

Drugs & Compounds for RNU4ATAC9P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC9P Gene

mRNA/cDNA for RNU4ATAC9P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC9P Gene

No ASD Table

Relevant External Links for RNU4ATAC9P Gene

GeneLoc Exon Structure for
RNU4ATAC9P

Expression for RNU4ATAC9P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4ATAC9P Gene

genes like me logo Genes that share expression patterns with RNU4ATAC9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC9P Gene

Orthologs for RNU4ATAC9P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC9P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4atac 31
  • 98 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U4atac 31
  • 79 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 31
  • 74 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U4atac 31
  • 66 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U4atac 31
  • 67 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U4atac 31 31 31
  • 74 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U4atac 31
  • 54 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U4atac 31
  • 53 (a)
OneToMany
Species where no ortholog for RNU4ATAC9P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU4ATAC9P Gene

ENSEMBL:
Gene Tree for RNU4ATAC9P (if available)
TreeFam:
Gene Tree for RNU4ATAC9P (if available)

Paralogs for RNU4ATAC9P Gene

No data available for Paralogs for RNU4ATAC9P Gene

Variants for RNU4ATAC9P Gene

Additional Variant Information for RNU4ATAC9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC9P Gene

Disorders for RNU4ATAC9P Gene

No disorders were found for RNU4ATAC9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC9P Gene

Publications for RNU4ATAC9P Gene

No publications were found for RNU4ATAC9P Gene.

No data available for Mastermind for RNU4ATAC9P Gene

Products for RNU4ATAC9P Gene

Sources for RNU4ATAC9P Gene