Aliases for RNU4ATAC5P Gene

Aliases for RNU4ATAC5P Gene

  • RNA, U4atac Small Nuclear 5, Pseudogene 2 3 5
  • RNU4ATAC5P 5

External Ids for RNU4ATAC5P Gene

Previous GeneCards Identifiers for RNU4ATAC5P Gene

  • GC11P122325
  • GC11P122330

Summaries for RNU4ATAC5P Gene

GeneCards Summary for RNU4ATAC5P Gene

RNU4ATAC5P (RNA, U4atac Small Nuclear 5, Pseudogene) is a Pseudogene.

Additional gene information for RNU4ATAC5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4ATAC5P Gene

Genomics for RNU4ATAC5P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4ATAC5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J122453 Enhancer 0.3 Ensembl 0.7 +2.6 2627 0.6 RAD21 EP300 RNU4ATAC5P HSALNG0087779 HSALNG0087783 MIR100HG UBASH3B BLID
GH11J122505 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.2 +54.3 54304 1.4 ZNF654 CTCF REST RAD21 RFX5 SMC3 ZBTB48 HNF4A BHLHE40 GATA2 HSALNG0087783 RNU4ATAC5P MIR100HG UBASH3B BLID
GH11J122491 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 0.3 +40.2 40227 2.2 MAX USF1 HSALNG0087783 RNU4ATAC5P HSALNG0087779 MIR100HG UBASH3B BLID
GH11J122523 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.2 +72.9 72873 2.7 SPI1 CHD2 POLR2A EP300 HSALNG0087783 ENSG00000255219 MIR100HG RNU4ATAC5P UBASH3B BLID
GH11J122487 Enhancer 0.3 Ensembl 0.3 +35.6 35639 0.6 SP1 BACH1 RNU4ATAC5P HSALNG0087783 HSALNG0087779 MIR100HG UBASH3B BLID
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4ATAC5P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4ATAC5P Gene

Latest Assembly
chr11:122,451,474-122,451,599
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand

Previous Assembly
chr11:122,322,182-122,322,307
(GRCh37/hg19 by Entrez Gene)
Size:
126 bases
Orientation:
Plus strand

chr11:122,322,182-122,322,307
(GRCh37/hg19 by Ensembl)
Size:
126 bases
Orientation:
Plus strand

Genomic View for RNU4ATAC5P Gene

Genes around RNU4ATAC5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC5P Gene

Proteins for RNU4ATAC5P Gene

Post-translational modifications for RNU4ATAC5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC5P Gene

Domains & Families for RNU4ATAC5P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4ATAC5P Gene

Function for RNU4ATAC5P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC5P Gene

Localization for RNU4ATAC5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC5P Gene

Pathways & Interactions for RNU4ATAC5P Gene

PathCards logo

SuperPathways for RNU4ATAC5P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4ATAC5P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4ATAC5P Gene

Drugs & Compounds for RNU4ATAC5P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC5P Gene

mRNA/cDNA for RNU4ATAC5P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC5P Gene

No ASD Table

Relevant External Links for RNU4ATAC5P Gene

GeneLoc Exon Structure for
RNU4ATAC5P

Expression for RNU4ATAC5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4ATAC5P Gene

genes like me logo Genes that share expression patterns with RNU4ATAC5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC5P Gene

Orthologs for RNU4ATAC5P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC5P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4atac 30
  • 98 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U4atac 30
  • 79 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 30
  • 72 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U4atac 30
  • 63 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U4atac 30
  • 69 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U4atac 30 30 30
  • 65 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U4atac 30
  • 55 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U4atac 30
  • 53 (a)
OneToMany
Species where no ortholog for RNU4ATAC5P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU4ATAC5P Gene

ENSEMBL:
Gene Tree for RNU4ATAC5P (if available)
TreeFam:
Gene Tree for RNU4ATAC5P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU4ATAC5P

Paralogs for RNU4ATAC5P Gene

No data available for Paralogs for RNU4ATAC5P Gene

Variants for RNU4ATAC5P Gene

Additional Variant Information for RNU4ATAC5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC5P
Leiden Open Variation Database (LOVD)
RNU4ATAC5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC5P Gene

Disorders for RNU4ATAC5P Gene

No disorders were found for RNU4ATAC5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC5P Gene

Publications for RNU4ATAC5P Gene

No publications were found for RNU4ATAC5P Gene.

Products for RNU4ATAC5P Gene

Sources for RNU4ATAC5P Gene