Aliases for RNU4ATAC4P Gene

Aliases for RNU4ATAC4P Gene

  • RNA, U4atac Small Nuclear 4, Pseudogene 2 3 5
  • RNU4ATAC4P 5

External Ids for RNU4ATAC4P Gene

Previous GeneCards Identifiers for RNU4ATAC4P Gene

  • GC01M067736

Summaries for RNU4ATAC4P Gene

GeneCards Summary for RNU4ATAC4P Gene

RNU4ATAC4P (RNA, U4atac Small Nuclear 4, Pseudogene) is a Pseudogene.

Additional gene information for RNU4ATAC4P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4ATAC4P Gene

Genomics for RNU4ATAC4P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4ATAC4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J067332 Enhancer 1 Ensembl ENCODE 10.9 -65.5 -65481 2 SP1 BACH1 STAT3 RELA TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED IL12RB2 RNU4ATAC4P NONHSAG001753.2 lnc-IL12RB2-1 SERBP1
GH01J067400 Enhancer 1 Ensembl ENCODE 10.4 -132.2 -132175 2.2 ZNF629 RFX1 DDX20 PRDM1 PKNOX1 PATZ1 REST DPF2 ZNF600 ZNF639 LOC105378779 lnc-IL12RB2-1 SERBP1 RNU4ATAC4P RNU6-387P RF00026-048 IL12RB2
GH01J067500 Enhancer 0.9 ENCODE 10.7 -232.9 -232877 0.2 GATAD2A CTCF TEAD4 PRDM10 JUND LARP7 ZNF143 ZNF24 RXRB REST RNU6-387P RNU4ATAC4P hsa-miR-5095-025 piR-46847-003 SERBP1 GADD45A
GH01J067458 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 10.3 -192.6 -192628 3.6 ZIC2 POLR2A ESR1 ZSCAN5C YY1 ZNF335 ZNF366 GLIS1 NANOG SP7 lnc-IL12RB2-5 RNU6-387P RNU4ATAC4P lnc-IL12RB2-6 SERBP1 GADD45A
GH01J067467 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.7 -201.0 -200975 2.6 RFX1 JUN FOS SMARCE1 NCOA3 RNU4ATAC4P RNU6-586P MIER1 lnc-IL12RB2-6 lnc-IL12RB2-5 SERBP1 GADD45A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4ATAC4P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4ATAC4P Gene

Genomic Locations for RNU4ATAC4P Gene
chr1:67,267,601-67,267,726
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr1:67,733,284-67,733,409
(GRCh37/hg19)
Size:
126 bases
Orientation:
Minus strand

Genomic View for RNU4ATAC4P Gene

Genes around RNU4ATAC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC4P Gene

Proteins for RNU4ATAC4P Gene

Post-translational modifications for RNU4ATAC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC4P Gene

Domains & Families for RNU4ATAC4P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4ATAC4P Gene

Function for RNU4ATAC4P Gene

Phenotypes From GWAS Catalog for RNU4ATAC4P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC4P Gene

Localization for RNU4ATAC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC4P Gene

Pathways & Interactions for RNU4ATAC4P Gene

PathCards logo

SuperPathways for RNU4ATAC4P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4ATAC4P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4ATAC4P Gene

Drugs & Compounds for RNU4ATAC4P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC4P Gene

mRNA/cDNA for RNU4ATAC4P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC4P Gene

No ASD Table

Relevant External Links for RNU4ATAC4P Gene

GeneLoc Exon Structure for
RNU4ATAC4P

Expression for RNU4ATAC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4ATAC4P Gene

genes like me logo Genes that share expression patterns with RNU4ATAC4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC4P Gene

Orthologs for RNU4ATAC4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC4P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4atac 31
  • 99 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U4atac 31
  • 79 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 31
  • 72 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U4atac 31
  • 67 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U4atac 31
  • 58 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U4atac 31 31 31
  • 68 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii U4atac 31
  • 63 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U4atac 31
  • 53 (a)
OneToMany
Species where no ortholog for RNU4ATAC4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU4ATAC4P Gene

ENSEMBL:
Gene Tree for RNU4ATAC4P (if available)
TreeFam:
Gene Tree for RNU4ATAC4P (if available)

Paralogs for RNU4ATAC4P Gene

No data available for Paralogs for RNU4ATAC4P Gene

Variants for RNU4ATAC4P Gene

Additional Variant Information for RNU4ATAC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC4P Gene

Disorders for RNU4ATAC4P Gene

No disorders were found for RNU4ATAC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC4P Gene

Publications for RNU4ATAC4P Gene

No publications were found for RNU4ATAC4P Gene.

No data available for Mastermind for RNU4ATAC4P Gene

Products for RNU4ATAC4P Gene

Sources for RNU4ATAC4P Gene