Aliases for RNU4ATAC16P Gene

Aliases for RNU4ATAC16P Gene

  • RNA, U4atac Small Nuclear 16, Pseudogene 2 3 5

External Ids for RNU4ATAC16P Gene

Previous GeneCards Identifiers for RNU4ATAC16P Gene

  • GC12P000893

Summaries for RNU4ATAC16P Gene

GeneCards Summary for RNU4ATAC16P Gene

RNU4ATAC16P (RNA, U4atac Small Nuclear 16, Pseudogene) is a Pseudogene.

Additional gene information for RNU4ATAC16P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4ATAC16P Gene

Genomics for RNU4ATAC16P Gene

GeneHancer (GH) Regulatory Elements for RNU4ATAC16P Gene

Promoters and enhancers for RNU4ATAC16P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000779 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 500.7 -1.1 -1064 2.5 FOS ZNF10 OSR2 ZBTB17 SAP130 FOSL2 CEBPB ZBTB11 JUND SIN3A RF00618-005 RNU4ATAC16P lnc-NINJ2-3 RAD52 NINJ2 WNK1
GH12J000716 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 -64.2 -64232 1.4 MEF2A NCOR1 TRIM24 MAX ZNF592 PBX2 FOSL1 EHMT2 ZNF644 TAL1 NINJ2 LINC02455 WNK1 RNU4ATAC16P B4GALNT3 piR-32214-098 lnc-WNK1-1
GH12J000805 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 12.8 +26.1 26080 2.6 ZSCAN5C ZNF300 ZNF639 ZNF10 TRIM28 KLF7 ATF2 ZEB1 FOXA2 OSR2 RAD52 WASH8P WNK1 RNU4ATAC16P LOC101929384 ENSG00000261799 KDM5A piR-48325-019 lnc-NINJ2-3
GH12J000717 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 -61.8 -61815 3 ZBTB40 ZSCAN5C ZBTB5 POLR2A NCOR1 ZNF384 NBN ZFHX2 ELF1 TAL1 WNK1 ENSG00000261799 NINJ2 RAD52 RNU4ATAC16P NINJ2-AS1 LINC02455 piR-32214-098 lnc-WNK1-1
GH12J000722 Enhancer 1 Ensembl ENCODE dbSUPER 11.5 -58.4 -58448 1.4 SP1 TEAD4 RELA POLR2A HDAC2 SALL2 TCF12 YY1 NBN IKZF1 piR-32214-098 WNK1 NINJ2 IQSEC3 RNU4ATAC16P lnc-WNK1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4ATAC16P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4ATAC16P Gene

Genomic Locations for RNU4ATAC16P Gene
chr12:781,133-781,258
(GRCh38/hg38)
Size:
126 bases
Orientation:
Plus strand
chr12:890,299-890,424
(GRCh37/hg19)
Size:
126 bases
Orientation:
Plus strand

Genomic View for RNU4ATAC16P Gene

Genes around RNU4ATAC16P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4ATAC16P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4ATAC16P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4ATAC16P Gene

Proteins for RNU4ATAC16P Gene

Post-translational modifications for RNU4ATAC16P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4ATAC16P Gene

Domains & Families for RNU4ATAC16P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4ATAC16P Gene

Function for RNU4ATAC16P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4ATAC16P Gene

Localization for RNU4ATAC16P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4ATAC16P Gene

Pathways & Interactions for RNU4ATAC16P Gene

PathCards logo

SuperPathways for RNU4ATAC16P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU4ATAC16P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4ATAC16P Gene

Drugs & Compounds for RNU4ATAC16P Gene

No Compound Related Data Available

Transcripts for RNU4ATAC16P Gene

mRNA/cDNA for RNU4ATAC16P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4ATAC16P Gene

No ASD Table

Relevant External Links for RNU4ATAC16P Gene

GeneLoc Exon Structure for
RNU4ATAC16P

Expression for RNU4ATAC16P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4ATAC16P Gene

genes like me logo Genes that share expression patterns with RNU4ATAC16P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4ATAC16P Gene

Orthologs for RNU4ATAC16P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4ATAC16P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4atac 31
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4atac 31
  • 83 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U4atac 31
  • 74 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4atac 31
  • 69 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U4atac 31
  • 68 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U4atac 31 31 31
  • 75 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U4atac 31
  • 55 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U4atac 31
  • 55 (a)
OneToMany
Species where no ortholog for RNU4ATAC16P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4ATAC16P Gene

ENSEMBL:
Gene Tree for RNU4ATAC16P (if available)
TreeFam:
Gene Tree for RNU4ATAC16P (if available)

Paralogs for RNU4ATAC16P Gene

No data available for Paralogs for RNU4ATAC16P Gene

Variants for RNU4ATAC16P Gene

Additional Variant Information for RNU4ATAC16P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4ATAC16P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4ATAC16P Gene

Disorders for RNU4ATAC16P Gene

No disorders were found for RNU4ATAC16P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4ATAC16P Gene

Publications for RNU4ATAC16P Gene

No publications were found for RNU4ATAC16P Gene.

No data available for Mastermind for RNU4ATAC16P Gene

Products for RNU4ATAC16P Gene

Sources for RNU4ATAC16P Gene