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Aliases for RNU4-86P Gene

Subcategory (RNA class) for RNU4-86P Gene

antisense

Aliases for RNU4-86P Gene

  • RNA, U4 Small Nuclear 86, Pseudogene 2 3 5

External Ids for RNU4-86P Gene

ORGUL Members for RNU4-86P Gene

Previous GeneCards Identifiers for RNU4-86P Gene

  • GC11M126085

Summaries for RNU4-86P Gene

GeneCards Summary for RNU4-86P Gene

RNU4-86P (RNA, U4 Small Nuclear 86, Pseudogene) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for RNU4-86P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-86P Gene

Genomics for RNU4-86P Gene

GeneHancer (GH) Regulatory Elements for RNU4-86P Gene

Promoters and enhancers for RNU4-86P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I126214 Enhancer 0.9 FANTOM5 Ensembl ENCODE 550.8 -0.5 -510 1.1 ZNF362 ZNF384 ZBTB33 RNU4-86P FOXRED1 FAM118B RN7SL351P
GH11I126215 Enhancer 0.4 Ensembl 550.8 +0.2 177 0.2 ZNF362 ZNF384 ZBTB33 RNU4-86P FAM118B RPUSD4
GH11I126280 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 10 -68.0 -67969 4.2 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF143 RXRA SP5 TIRAP FOXRED1 FAM118B ENSG00000254694 DCPS HP11014 RPUSD4 RNU4-86P ENSG00000254905
GH11I126188 Enhancer 1.1 ENCODE dbSUPER 11.2 +25.3 25255 2.1 PKNOX1 MLX ARID4B ZNF48 ATF7 RUNX3 SP5 NFYC JUNB PPARG FAM118B FOXRED1 RPUSD4 ENSG00000254833 ENSG00000254790 RNU4-86P DCPS ENSG00000254771 ENSG00000254694
GH11I126190 Enhancer 0.7 ENCODE dbSUPER 11.2 +23.5 23494 1.2 NFIC NFIB ZNF548 HNF4A RAD21 FAM118B RPUSD4 RNU4-86P ENSG00000254790 DCPS ENSG00000254771 ENSG00000254694
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-86P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-86P Gene

Genomic Locations for RNU4-86P Gene
chr11:126,214,260-126,214,478
(GRCh38/hg38)
Size:
219 bases
Orientation:
Minus strand
chr11:126,084,155-126,084,373
(GRCh37/hg19)

Genomic View for RNU4-86P Gene

Genes around RNU4-86P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-86P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-86P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-86P Gene

Proteins for RNU4-86P Gene

Post-translational modifications for RNU4-86P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-86P Gene

Domains & Families for RNU4-86P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-86P Gene

Function for RNU4-86P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-86P Gene

Localization for RNU4-86P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-86P Gene

Pathways & Interactions for RNU4-86P Gene

SuperPathways for RNU4-86P Gene

No Data Available

Interacting Proteins for RNU4-86P Gene

Gene Ontology (GO) - Biological Process for RNU4-86P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-86P Gene

Drugs & Compounds for RNU4-86P Gene

No Compound Related Data Available

Transcripts for RNU4-86P Gene

mRNA/cDNA for RNU4-86P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-86P Gene

No ASD Table

Relevant External Links for RNU4-86P Gene

GeneLoc Exon Structure for
RNU4-86P
ECgene alternative splicing isoforms for
RNU4-86P

Expression for RNU4-86P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-86P Gene

genes like me logo Genes that share expression patterns with RNU4-86P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-86P Gene

Orthologs for RNU4-86P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-86P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 70 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U4 34
  • 57 (a)
ManyToMany
Species where no ortholog for RNU4-86P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-86P Gene

ENSEMBL:
Gene Tree for RNU4-86P (if available)
TreeFam:
Gene Tree for RNU4-86P (if available)

Paralogs for RNU4-86P Gene

No data available for Paralogs for RNU4-86P Gene

Variants for RNU4-86P Gene

Additional Variant Information for RNU4-86P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-86P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-86P Gene

Disorders for RNU4-86P Gene

No disorders were found for RNU4-86P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-86P Gene

Publications for RNU4-86P Gene

No publications were found for RNU4-86P Gene.

Products for RNU4-86P Gene

Sources for RNU4-86P Gene

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