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Aliases for RNU4-82P Gene

Subcategory (RNA class) for RNU4-82P Gene

snRNA

Aliases for RNU4-82P Gene

  • RNA, U4 Small Nuclear 82, Pseudogene 2 3 5

External Ids for RNU4-82P Gene

ORGUL Members for RNU4-82P Gene

Previous GeneCards Identifiers for RNU4-82P Gene

  • GC09M127651

Summaries for RNU4-82P Gene

GeneCards Summary for RNU4-82P Gene

RNU4-82P (RNA, U4 Small Nuclear 82, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-82P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-82P Gene

Genomics for RNU4-82P Gene

GeneHancer (GH) Regulatory Elements for RNU4-82P Gene

Promoters and enhancers for RNU4-82P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I124866 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +16.8 16833 8 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 ARPC5L GOLGA1 GAPVD1 PRPS1P2 NR6A1 ENSG00000236643 SCAI GC09M124888 RNU4-82P
GH09I124897 Enhancer 0.8 ENCODE 0.4 -10.3 -10335 1 FOXA2 RAD21 RARA ETS1 ATF7 CREM THAP11 MIXL1 CEBPB KAT8 ARPC5L RPL35 WDR38 RPSAP76 RABEPK GOLGA1 GC09M124888 RNU4-82P GC09P124941
GH09I124894 Enhancer 0.7 ENCODE 0.4 -7.2 -7238 0.2 HDGF CTCF SUZ12 RAD21 ZKSCAN1 TEAD3 SMC3 ZNF143 ZNF444 PRDM10 ARPC5L RPL35 WDR38 RABEPK RPSAP76 GC09M124888 RNU4-82P GC09P124941 GOLGA1
GH09I124881 Enhancer 0.5 ENCODE dbSUPER 0.4 +6.9 6931 0.4 PKNOX1 WDR38 OLFML2A GOLGA1 GC09M124888 RNU4-82P ARPC5L
GH09I124880 Enhancer 0.3 dbSUPER 0.4 +6.2 6205 0.8 ZNF547 ARPC5L WDR38 OLFML2A GOLGA1 PPP6C GC09M124888 RNU4-82P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-82P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-82P Gene

Genomic Locations for RNU4-82P Gene
chr9:124,887,410-124,887,549
(GRCh38/hg38)
Size:
140 bases
Orientation:
Minus strand
chr9:127,649,689-127,649,828
(GRCh37/hg19)

Genomic View for RNU4-82P Gene

Genes around RNU4-82P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-82P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-82P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-82P Gene

Proteins for RNU4-82P Gene

Post-translational modifications for RNU4-82P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-82P Gene

Domains & Families for RNU4-82P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-82P Gene

Function for RNU4-82P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-82P Gene

Localization for RNU4-82P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-82P Gene

Pathways & Interactions for RNU4-82P Gene

SuperPathways for RNU4-82P Gene

No Data Available

Interacting Proteins for RNU4-82P Gene

Gene Ontology (GO) - Biological Process for RNU4-82P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-82P Gene

Drugs & Compounds for RNU4-82P Gene

No Compound Related Data Available

Transcripts for RNU4-82P Gene

mRNA/cDNA for RNU4-82P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-82P Gene

No ASD Table

Relevant External Links for RNU4-82P Gene

GeneLoc Exon Structure for
RNU4-82P
ECgene alternative splicing isoforms for
RNU4-82P

Expression for RNU4-82P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-82P Gene

genes like me logo Genes that share expression patterns with RNU4-82P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-82P Gene

Orthologs for RNU4-82P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-82P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 34
  • 91 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23214 34
  • 52 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia U4 34 34
  • 50 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U4 34 34 34 34 34 34 34 34 34 34 34
  • 48 (a)
OneToMany
Species where no ortholog for RNU4-82P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-82P Gene

ENSEMBL:
Gene Tree for RNU4-82P (if available)
TreeFam:
Gene Tree for RNU4-82P (if available)

Paralogs for RNU4-82P Gene

No data available for Paralogs for RNU4-82P Gene

Variants for RNU4-82P Gene

Additional Variant Information for RNU4-82P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-82P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-82P Gene

Disorders for RNU4-82P Gene

No disorders were found for RNU4-82P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-82P Gene

Publications for RNU4-82P Gene

No publications were found for RNU4-82P Gene.

Products for RNU4-82P Gene

Sources for RNU4-82P Gene

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