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Aliases for RNU4-7P Gene

Subcategory (RNA class) for RNU4-7P Gene

lncRNA

Aliases for RNU4-7P Gene

  • RNA, U4 Small Nuclear 7, Pseudogene 2 3 5
  • RNA, U4 Small Nuclear Pseudogene 1 (U4/7) 2 3
  • RNU4P1 3
  • U4/7 3
  • U4 3

External Ids for RNU4-7P Gene

ORGUL Members for RNU4-7P Gene

Previous HGNC Symbols for RNU4-7P Gene

  • RNU4P1

Previous GeneCards Identifiers for RNU4-7P Gene

  • GC06M150689

Summaries for RNU4-7P Gene

GeneCards Summary for RNU4-7P Gene

RNU4-7P (RNA, U4 Small Nuclear 7, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RNU4-7P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-7P Gene

Genomics for RNU4-7P Gene

GeneHancer (GH) Regulatory Elements for RNU4-7P Gene

Promoters and enhancers for RNU4-7P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I150326 Enhancer 0.7 ENCODE 550.8 -0.3 -321 1.2 NFRKB TAL1 FOSL1 TCF12 CTBP1 CBFA2T2 CREM EGR2 SOX6 NR4A1 GC06M150327 RNU4-7P GC06M150158
GH06I150266 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +56.7 56694 8.3 HDGF PKNOX1 SMAD1 ARNT FEZF1 ZNF2 ZNF766 CBX5 ZNF416 FOS LOC105378054 LATS1 NUP43 PPIL4 ENSG00000231760 KATNA1 RNU4-7P ENSG00000238594 ENSG00000233330 PPP1R14C
GH06I150292 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.3 +33.7 33745 2.6 HDAC1 ATF1 PKNOX1 NFRKB ZBTB40 ZNF335 ZNF766 CBX5 FOS ETV6 RNU4-7P IYD RAET1E LOC105378054 GC06M150327 GC06M150158
GH06I150195 Enhancer 1.1 ENCODE dbSUPER 11.4 +130.3 130336 1.6 PKNOX1 ARNT FEZF1 ZNF2 ZNF213 TSHZ1 ZNF488 MEF2D ZNF610 GLIS1 NUP43 PPIL4 ENSG00000231760 ENSG00000238594 KATNA1 RNU4-7P LATS1 RAET1E PPP1R14C LOC105378054
GH06I150296 Enhancer 1 ENCODE dbSUPER 12.3 +29.5 29500 1.9 PKNOX1 ATF1 KLF17 CHAMP1 ZNF280A ZNF766 CBX5 ZNF350 ATF7 USF2 RNU4-7P LATS1 IYD RAET1E BTF3P10 LOC105378054 GC06M150327 GC06M150158
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-7P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-7P Gene

Genomic Locations for RNU4-7P Gene
chr6:150,326,564-150,327,063
(GRCh38/hg38)
Size:
500 bases
Orientation:
Minus strand
chr6:150,647,700-150,648,199
(GRCh37/hg19)

Genomic View for RNU4-7P Gene

Genes around RNU4-7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-7P Gene

Proteins for RNU4-7P Gene

Post-translational modifications for RNU4-7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-7P Gene

Domains & Families for RNU4-7P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-7P Gene

Function for RNU4-7P Gene

Phenotypes From GWAS Catalog for RNU4-7P Gene

Phenotypes for RNU4-7P Gene

GenomeRNAi human phenotypes for RNU4-7P:
genes like me logo Genes that share phenotypes with RNU4-7P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-7P Gene

Localization for RNU4-7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-7P Gene

Pathways & Interactions for RNU4-7P Gene

SuperPathways for RNU4-7P Gene

No Data Available

Interacting Proteins for RNU4-7P Gene

Gene Ontology (GO) - Biological Process for RNU4-7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-7P Gene

Drugs & Compounds for RNU4-7P Gene

No Compound Related Data Available

Transcripts for RNU4-7P Gene

mRNA/cDNA for RNU4-7P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-7P Gene

No ASD Table

Relevant External Links for RNU4-7P Gene

GeneLoc Exon Structure for
RNU4-7P
ECgene alternative splicing isoforms for
RNU4-7P

Expression for RNU4-7P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-7P Gene

genes like me logo Genes that share expression patterns with RNU4-7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-7P Gene

Orthologs for RNU4-7P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU4-7P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26393 34
  • 76 (a)
ManyToMany
Species where no ortholog for RNU4-7P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-7P Gene

ENSEMBL:
Gene Tree for RNU4-7P (if available)
TreeFam:
Gene Tree for RNU4-7P (if available)

Paralogs for RNU4-7P Gene

No data available for Paralogs for RNU4-7P Gene

Variants for RNU4-7P Gene

Additional Variant Information for RNU4-7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-7P Gene

Disorders for RNU4-7P Gene

Additional Disease Information for RNU4-7P

Genetic Association Database
(GAD)

No disorders were found for RNU4-7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNU4-7P Gene

Publications for RNU4-7P Gene

  1. Nucleotide sequence and organization of full length human U4 RNA pseudogenes. (PMID: 2583518) Bark C … Pettersson U (Gene 1989) 2 3 58
  2. Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum. (PMID: 19043545) Gieger C … Suhre K (PLoS genetics 2008) 44 58

Products for RNU4-7P Gene

Sources for RNU4-7P Gene

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