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Aliases for RNU4-71P Gene

Aliases for RNU4-71P Gene

  • RNA, U4 Small Nuclear 71, Pseudogene 2 3 5

External Ids for RNU4-71P Gene

Previous GeneCards Identifiers for RNU4-71P Gene

  • GC08M023458

Summaries for RNU4-71P Gene

GeneCards Summary for RNU4-71P Gene

RNU4-71P (RNA, U4 Small Nuclear 71, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-71P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-71P Gene

Genomics for RNU4-71P Gene

GeneHancer (GH) Regulatory Elements for RNU4-71P Gene

Promoters and enhancers for RNU4-71P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I023598 Enhancer 0.3 FANTOM5 550.8 +1.4 1374 0.2 RNU4-71P TNFRSF10C ENTPD4 GC08M023551
GH08I023557 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +40.0 40046 4.8 ELF3 CLOCK FOXA2 ZNF48 ZSCAN9 RAD21 RARA YY1 ETV6 FOS SLC25A37 ENTPD4 ENSG00000253390 NKX3-1 RNU4-71P ENSG00000253200 EGR3 TNFRSF10C TNFRSF10B GC08M023551
GH08I023574 Enhancer 0.9 Ensembl dbSUPER 0.3 +25.6 25637 0.2 HDAC1 MEIS2 JUN FOSL1 POLR2B ZNF316 POLR2A VEZF1 NFE2 ATF7 GC08M023551 RNU4-71P SLC25A37
GH08I023572 Enhancer 0.6 dbSUPER 0.3 +26.8 26848 1.3 FOSL1 RUNX1 MTA3 POLR2B POLR2A MYNN ZNF24 NFE2 SUPT5H GC08M023551 RNU4-71P SLC25A37
GH08I023566 Enhancer 0.6 ENCODE dbSUPER 0.3 +32.5 32469 3.2 POLR2A MYNN SLC25A37 NKX3-1 GC08M023551 RNU4-71P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-71P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-71P Gene

Genomic Locations for RNU4-71P Gene
chr8:23,600,026-23,600,138
(GRCh38/hg38)
Size:
113 bases
Orientation:
Minus strand
chr8:23,457,539-23,457,651
(GRCh37/hg19)

Genomic View for RNU4-71P Gene

Genes around RNU4-71P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-71P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-71P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-71P Gene

Proteins for RNU4-71P Gene

Post-translational modifications for RNU4-71P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-71P Gene

Domains & Families for RNU4-71P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-71P Gene

Function for RNU4-71P Gene

Phenotypes From GWAS Catalog for RNU4-71P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-71P Gene

Localization for RNU4-71P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-71P Gene

Pathways & Interactions for RNU4-71P Gene

SuperPathways for RNU4-71P Gene

No Data Available

Interacting Proteins for RNU4-71P Gene

Gene Ontology (GO) - Biological Process for RNU4-71P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-71P Gene

Drugs & Compounds for RNU4-71P Gene

No Compound Related Data Available

Transcripts for RNU4-71P Gene

mRNA/cDNA for RNU4-71P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-71P Gene

No ASD Table

Relevant External Links for RNU4-71P Gene

GeneLoc Exon Structure for
RNU4-71P
ECgene alternative splicing isoforms for
RNU4-71P

Expression for RNU4-71P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-71P Gene

genes like me logo Genes that share expression patterns with RNU4-71P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-71P Gene

Orthologs for RNU4-71P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-71P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 78 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 34
  • 67 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23672 34
  • 64 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 62 (a)
OneToMany
dog
(Canis familiaris)
Mammalia U4 34
  • 41 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 34
  • 47 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U4 34
  • 47 (a)
OneToMany
Species where no ortholog for RNU4-71P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-71P Gene

ENSEMBL:
Gene Tree for RNU4-71P (if available)
TreeFam:
Gene Tree for RNU4-71P (if available)

Paralogs for RNU4-71P Gene

No data available for Paralogs for RNU4-71P Gene

Variants for RNU4-71P Gene

Additional Variant Information for RNU4-71P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-71P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-71P Gene

Disorders for RNU4-71P Gene

No disorders were found for RNU4-71P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-71P Gene

Publications for RNU4-71P Gene

No publications were found for RNU4-71P Gene.

Products for RNU4-71P Gene

Sources for RNU4-71P Gene

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