Aliases for RNU4-71P Gene

Aliases for RNU4-71P Gene

  • RNA, U4 Small Nuclear 71, Pseudogene 2 3 5
  • RNU4-71P 5

External Ids for RNU4-71P Gene

Previous GeneCards Identifiers for RNU4-71P Gene

  • GC08M023458

Summaries for RNU4-71P Gene

GeneCards Summary for RNU4-71P Gene

RNU4-71P (RNA, U4 Small Nuclear 71, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-71P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-71P Gene

Genomics for RNU4-71P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4-71P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J023598 Enhancer 0.6 FANTOM5 Ensembl 600.7 +1.2 1237 0.6 NFE2 FOXA2 RNU4-71P TNFRSF10C ENTPD4 RF00994-1055 SLC25A37 NKX3-1 RF00017-6891
GH08J023557 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.5 +40.0 40046 4.8 GATAD2A RCOR2 PRDM1 ZIC2 RXRB IRF2 SP1 CEBPA EED SOX13 SLC25A37 ENTPD4 ENSG00000253390 NKX3-1 RNU4-71P ENSG00000253200 EGR3 TNFRSF10C TNFRSF10B HSALNG0063995
GH08J023572 Enhancer 0.9 Ensembl dbSUPER 11.1 +25.5 25537 2.8 JUND ZNF24 DPF2 POLR2A DNMT1 NFE2 HDAC2 ZNF316 FOSL1 MAFG NKX3-1 RNU4-71P SLC25A37 HSALNG0063995 RF00994-1055
GH08J023605 Enhancer 0.4 ENCODE 0.4 -6.0 -6003 1.6 FOXA1 GATA3 IKZF1 EGR2 SLC25A37 RNU4-71P lnc-NKX3-1-2 NKX3-1 RF00017-6891
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-71P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4-71P Gene

Genomic Locations for RNU4-71P Gene
chr8:23,600,026-23,600,138
(GRCh38/hg38)
Size:
113 bases
Orientation:
Minus strand
chr8:23,457,539-23,457,651
(GRCh37/hg19)
Size:
113 bases
Orientation:
Minus strand

Genomic View for RNU4-71P Gene

Genes around RNU4-71P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-71P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-71P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-71P Gene

Proteins for RNU4-71P Gene

Post-translational modifications for RNU4-71P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-71P Gene

Domains & Families for RNU4-71P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-71P Gene

Function for RNU4-71P Gene

Phenotypes From GWAS Catalog for RNU4-71P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-71P Gene

Localization for RNU4-71P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-71P Gene

Pathways & Interactions for RNU4-71P Gene

PathCards logo

SuperPathways for RNU4-71P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4-71P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-71P Gene

Drugs & Compounds for RNU4-71P Gene

No Compound Related Data Available

Transcripts for RNU4-71P Gene

mRNA/cDNA for RNU4-71P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-71P Gene

No ASD Table

Relevant External Links for RNU4-71P Gene

GeneLoc Exon Structure for
RNU4-71P

Expression for RNU4-71P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-71P Gene

genes like me logo Genes that share expression patterns with RNU4-71P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-71P Gene

Orthologs for RNU4-71P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-71P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4 31
  • 78 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia U4 31
  • 67 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm23672 31
  • 64 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia U4 31
  • 62 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia U4 31
  • 41 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia U4 31
  • 47 (a)
OneToOne
Sea Squirt
(Ciona savignyi)
Ascidiacea U4 31
  • 47 (a)
OneToMany
Species where no ortholog for RNU4-71P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU4-71P Gene

ENSEMBL:
Gene Tree for RNU4-71P (if available)
TreeFam:
Gene Tree for RNU4-71P (if available)

Paralogs for RNU4-71P Gene

No data available for Paralogs for RNU4-71P Gene

Variants for RNU4-71P Gene

Additional Variant Information for RNU4-71P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-71P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-71P Gene

Disorders for RNU4-71P Gene

No disorders were found for RNU4-71P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-71P Gene

Publications for RNU4-71P Gene

No publications were found for RNU4-71P Gene.

No data available for Mastermind for RNU4-71P Gene

Products for RNU4-71P Gene

Sources for RNU4-71P Gene