Aliases for RNU4-6P Gene

Aliases for RNU4-6P Gene

  • RNA, U4 Small Nuclear 6, Pseudogene 2 3 5
  • RNA, U4 Small Nuclear Pseudogene 6 2 3
  • U4/8 2 3
  • U4 2 3
  • RNU4-6P 5
  • RNU4P6 3

External Ids for RNU4-6P Gene

Previous HGNC Symbols for RNU4-6P Gene

  • RNU4P6

Previous GeneCards Identifiers for RNU4-6P Gene

  • GC0XM016805
  • GC0XM016894
  • GC0XM016878

Summaries for RNU4-6P Gene

GeneCards Summary for RNU4-6P Gene

RNU4-6P (RNA, U4 Small Nuclear 6, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-6P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-6P Gene

Genomics for RNU4-6P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ016874 Enhancer 0.4 Ensembl 600.7 +0.8 819 0.2 ESR1 ZNF316 EMSY RF00015-078 RNU4-6P ENSG00000201467 RBBP7 REPS2
GH0XJ016881 Promoter/Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 0.4 -7.7 -7657 2 CTCF PRDM10 RFX1 IKZF1 DDX20 REST RAD21 TRIM22 ZNF341 SCRT2 ENSG00000201467 TXLNG RNU4-6P RBBP7 ENSG00000223498 SLC35C2P1 REPS2
GH0XJ016892 Enhancer 0.8 ENCODE 0.4 -17.7 -17653 0.2 CTCF PRDM10 IKZF1 FOXA1 PRDM1 ZNF143 REST RAD21 IKZF2 TRIM22 ENSG00000223498 SLC35C2P1 RNU4-6P RBBP7 REPS2
GH0XJ016885 Enhancer 0.5 Ensembl 0.4 -10.5 -10481 0.8 PRDM10 RUNX3 ZNF112 PRDM6 SPI1 ENSG00000201467 REPS2 ENSG00000223498 RNU4-6P SLC35C2P1 RBBP7
GH0XJ016888 Enhancer 0.3 Ensembl 0.4 -13.6 -13581 0.2 NR3C1 ENSG00000223498 SLC35C2P1 RNU4-6P RBBP7 REPS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-6P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4-6P Gene

Genomic Locations for RNU4-6P Gene
chrX:16,875,117-16,875,320
(GRCh38/hg38)
Size:
204 bases
Orientation:
Minus strand
chrX:16,893,240-16,893,443
(GRCh37/hg19)
Size:
204 bases
Orientation:
Minus strand

Genomic View for RNU4-6P Gene

Genes around RNU4-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-6P Gene

Proteins for RNU4-6P Gene

Post-translational modifications for RNU4-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-6P Gene

Domains & Families for RNU4-6P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-6P Gene

Function for RNU4-6P Gene

Phenotypes From GWAS Catalog for RNU4-6P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-6P Gene

Localization for RNU4-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-6P Gene

Pathways & Interactions for RNU4-6P Gene

PathCards logo

SuperPathways for RNU4-6P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4-6P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-6P Gene

Drugs & Compounds for RNU4-6P Gene

No Compound Related Data Available

Transcripts for RNU4-6P Gene

mRNA/cDNA for RNU4-6P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-6P Gene

No ASD Table

Relevant External Links for RNU4-6P Gene

GeneLoc Exon Structure for
RNU4-6P

Expression for RNU4-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-6P Gene

genes like me logo Genes that share expression patterns with RNU4-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-6P Gene

Orthologs for RNU4-6P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-6P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4 31
  • 100 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U4 31
  • 72 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U4 31
  • 67 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22116 31
  • 52 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U4 31
  • 48 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U4 31
  • 54 (a)
OneToMany
Species where no ortholog for RNU4-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU4-6P Gene

ENSEMBL:
Gene Tree for RNU4-6P (if available)
TreeFam:
Gene Tree for RNU4-6P (if available)

Paralogs for RNU4-6P Gene

No data available for Paralogs for RNU4-6P Gene

Variants for RNU4-6P Gene

Additional Variant Information for RNU4-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-6P Gene

Disorders for RNU4-6P Gene

No disorders were found for RNU4-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-6P Gene

Publications for RNU4-6P Gene

  1. Nonrandom integration of human U4 RNA pseudogenes. (PMID: 2582241) Bark C … Pettersson U (Molecular and cellular biology 1985) 2 3

Products for RNU4-6P Gene

Sources for RNU4-6P Gene