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Aliases for RNU4-60P Gene

Subcategory (RNA class) for RNU4-60P Gene

snRNA

Aliases for RNU4-60P Gene

  • RNA, U4 Small Nuclear 60, Pseudogene 2 3 5

External Ids for RNU4-60P Gene

ORGUL Members for RNU4-60P Gene

Previous GeneCards Identifiers for RNU4-60P Gene

  • GC19P042979

Summaries for RNU4-60P Gene

GeneCards Summary for RNU4-60P Gene

RNU4-60P (RNA, U4 Small Nuclear 60, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-60P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-60P Gene

Genomics for RNU4-60P Gene

GeneHancer (GH) Regulatory Elements for RNU4-60P Gene

Promoters and enhancers for RNU4-60P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I042471 Enhancer 0.9 ENCODE dbSUPER 550.8 -1.1 -1064 1.7 ZNF792 ZNF449 ZNF664 ZNF335 ZSCAN5C ZNF600 ZBTB20 GFI1B ZFP37 REST RNU4-60P PIR51613 LIPE-AS1
GH19I042449 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -22.5 -22546 1.7 PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B DMAP1 IRF4 YY1 SLC30A9 LIPE RNU4-60P PSG8 CD177 CEACAM1 CXCL17 PIR51613 LIPE-AS1
GH19I042432 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.7 -39.4 -39364 1.8 FOXA2 MLX ZNF493 ARID4B ZNF48 ETS1 YY1 ZNF766 ARID2 ZNF143 GC19P042435 CNFN RNU4-60P POU2F2 LOC100505622 MEGF8 LIPE CXCL17 LIPE-AS1
GH19I042447 Enhancer 0.2 ENCODE 11.3 -25.6 -25591 0.2 RNU4-60P LIPE-AS1 CXCL17 PIR51613
GH19I042467 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 -4.3 -4308 1.1 FEZF1 ZNF2 ZNF416 KLF7 FOS TSHZ1 ZNF518A ZNF610 GLIS1 PRDM4 ZNF574 CXCL17 ENSG00000268355 RNU4-60P PIR51613 LIPE-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-60P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-60P Gene

Genomic Locations for RNU4-60P Gene
chr19:42,472,875-42,473,009
(GRCh38/hg38)
Size:
135 bases
Orientation:
Plus strand
chr19:42,977,027-42,977,161
(GRCh37/hg19)

Genomic View for RNU4-60P Gene

Genes around RNU4-60P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-60P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-60P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-60P Gene

Proteins for RNU4-60P Gene

Post-translational modifications for RNU4-60P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-60P Gene

Domains & Families for RNU4-60P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-60P Gene

Function for RNU4-60P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-60P Gene

Localization for RNU4-60P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-60P Gene

Pathways & Interactions for RNU4-60P Gene

SuperPathways for RNU4-60P Gene

No Data Available

Interacting Proteins for RNU4-60P Gene

Gene Ontology (GO) - Biological Process for RNU4-60P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-60P Gene

Drugs & Compounds for RNU4-60P Gene

No Compound Related Data Available

Transcripts for RNU4-60P Gene

mRNA/cDNA for RNU4-60P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-60P Gene

No ASD Table

Relevant External Links for RNU4-60P Gene

GeneLoc Exon Structure for
RNU4-60P
ECgene alternative splicing isoforms for
RNU4-60P

Expression for RNU4-60P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-60P Gene

genes like me logo Genes that share expression patterns with RNU4-60P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-60P Gene

Orthologs for RNU4-60P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-60P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm25179 34
  • 59 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U4 34
  • 56 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 34
  • 47 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4 34
  • 47 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 34
  • 55 (a)
OneToOne
Species where no ortholog for RNU4-60P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-60P Gene

ENSEMBL:
Gene Tree for RNU4-60P (if available)
TreeFam:
Gene Tree for RNU4-60P (if available)

Paralogs for RNU4-60P Gene

No data available for Paralogs for RNU4-60P Gene

Variants for RNU4-60P Gene

Additional Variant Information for RNU4-60P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-60P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-60P Gene

Disorders for RNU4-60P Gene

No disorders were found for RNU4-60P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-60P Gene

Publications for RNU4-60P Gene

No publications were found for RNU4-60P Gene.

Products for RNU4-60P Gene

Sources for RNU4-60P Gene

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