Aliases for RNU4-59P Gene

Aliases for RNU4-59P Gene

  • RNA, U4 Small Nuclear 59, Pseudogene 2 3 5
  • RNU4-59P 5

External Ids for RNU4-59P Gene

Previous GeneCards Identifiers for RNU4-59P Gene

  • GC01M093168

Summaries for RNU4-59P Gene

GeneCards Summary for RNU4-59P Gene

RNU4-59P (RNA, U4 Small Nuclear 59, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-59P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-59P Gene

Genomics for RNU4-59P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RNU4-59P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092755 Promoter/Enhancer 0.9 Ensembl ENCODE 11.2 -55.3 -55273 1.3 ATF2 CTBP1 MAFF ZNF316 MAFK ZBTB33 ATF4 ATF7 NRF1 EMSY CCNJP2 lnc-RPL5-2 RPL5 RNU4-59P SNORA66 SNORD21 EVI5 lnc-FAM69A-2 GFI1
GH01J092752 Enhancer 0.6 ENCODE 11.2 -52.9 -52868 2.7 JUND ATF2 FEZF1 PRDM6 REST ZNF384 SP7 PKNOX1 MZF1 GATAD2A CCNJP2 lnc-RPL5-2 EVI5 RPL5 RNU4-59P SNORD21 SNORA66 H3P3 lnc-FAM69A-2 GFI1
GH01J092748 Enhancer 0.6 Ensembl 11.2 -48.3 -48288 0.4 ZNF654 REST TRIM22 CTCF RAD21 SMC3 RFX5 ELF1 ZNF143 ELF3 H3P3 EVI5 RPL5 RNU4-59P SNORD21 SNORA66 LOC100289500 lnc-FAM69A-2 GFI1
GH01J092662 Enhancer 0.3 Ensembl 11.1 +38.5 38533 0.8 CEBPB RNU4-59P DIPK1A HSALNG0005212 RF00015-004 EVI5 GFI1
GH01J092742 Enhancer 0.3 Ensembl 10.1 -42.7 -42667 1.6 ZNF146 EVI5 RPL5 RNU4-59P SNORD21 SNORA66 DIPK1A H3P3 LOC100289500 lnc-FAM69A-2 GFI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-59P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4-59P Gene

Latest Assembly
chr1:92,700,819-92,700,934
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Previous Assembly
chr1:93,166,376-93,166,491
(GRCh37/hg19 by Entrez Gene)
Size:
116 bases
Orientation:
Minus strand

chr1:93,166,376-93,166,491
(GRCh37/hg19 by Ensembl)
Size:
116 bases
Orientation:
Minus strand

Genomic View for RNU4-59P Gene

Genes around RNU4-59P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-59P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-59P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-59P Gene

Proteins for RNU4-59P Gene

Post-translational modifications for RNU4-59P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-59P Gene

Domains & Families for RNU4-59P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-59P Gene

Function for RNU4-59P Gene

Phenotypes From GWAS Catalog for RNU4-59P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-59P Gene

Localization for RNU4-59P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-59P Gene

Pathways & Interactions for RNU4-59P Gene

PathCards logo

SuperPathways for RNU4-59P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4-59P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-59P Gene

Drugs & Compounds for RNU4-59P Gene

No Compound Related Data Available

Transcripts for RNU4-59P Gene

mRNA/cDNA for RNU4-59P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-59P Gene

No ASD Table

Relevant External Links for RNU4-59P Gene

GeneLoc Exon Structure for
RNU4-59P

Expression for RNU4-59P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-59P Gene

genes like me logo Genes that share expression patterns with RNU4-59P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-59P Gene

Orthologs for RNU4-59P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-59P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U4 30
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm22720 30
  • 77 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia U4 30
  • 58 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U4 30 30 30 30
  • 57 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia U4 30
  • 52 (a)
ManyToMany
Species where no ortholog for RNU4-59P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RNU4-59P Gene

ENSEMBL:
Gene Tree for RNU4-59P (if available)
TreeFam:
Gene Tree for RNU4-59P (if available)
Alliance of Genome Resources:
Additional Orthologs for RNU4-59P

Paralogs for RNU4-59P Gene

No data available for Paralogs for RNU4-59P Gene

Variants for RNU4-59P Gene

Additional Variant Information for RNU4-59P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-59P
Leiden Open Variation Database (LOVD)
RNU4-59P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-59P Gene

Disorders for RNU4-59P Gene

No disorders were found for RNU4-59P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-59P Gene

Publications for RNU4-59P Gene

No publications were found for RNU4-59P Gene.

No data available for Mastermind for RNU4-59P Gene

Products for RNU4-59P Gene

Sources for RNU4-59P Gene