RNU4-54P Gene (Pseudogene)

RNA, U4 Small Nuclear 54, Pseudogene

GC12M028319
GIFtS:
6

Aliases for RNU4-54P Gene

Aliases for RNU4-54P Gene

  • RNA, U4 Small Nuclear 54, Pseudogene 2 3 5

External Ids for RNU4-54P Gene

Previous GeneCards Identifiers for RNU4-54P Gene

  • GC12M028473

Summaries for RNU4-54P Gene

GeneCards Summary for RNU4-54P Gene

RNU4-54P (RNA, U4 Small Nuclear 54, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-54P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-54P Gene

Genomics for RNU4-54P Gene

GeneHancer (GH) Regulatory Elements for RNU4-54P Gene

Promoters and enhancers for RNU4-54P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J028320 Enhancer 0.2 Ensembl 500.7 -1.5 -1538 0.4 RNU4-54P RF00994-223 CCDC91
GH12J028294 Enhancer 0.4 Ensembl 12.2 +25.0 24962 0.6 SPI1 TRIM24 CHAMP1 ZNF316 IKZF1 CCDC91 RNU4-54P ENSG00000247934 piR-44460 piR-50444-076
GH12J028390 Enhancer 0.4 Ensembl ENCODE 11.4 -70.6 -70646 2.6 SCRT2 CCDC91 RNU4-54P ENSG00000257042 piR-39858-119 piR-38351-094
GH12J028348 Enhancer 0.2 FANTOM5 12.1 -29.1 -29080 0.3 RNU4-54P RF00994-223 CCDC91
GH12J028388 Enhancer 0.2 Ensembl 11.4 -68.8 -68838 0.2 RNU4-54P ENSG00000257042 piR-39858-119 piR-38351-094 CCDC91
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-54P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-54P Gene

Genomic Locations for RNU4-54P Gene
chr12:28,319,335-28,319,463
(GRCh38/hg38)
Size:
129 bases
Orientation:
Minus strand
chr12:28,472,268-28,472,396
(GRCh37/hg19)
Size:
129 bases
Orientation:
Minus strand

Genomic View for RNU4-54P Gene

Genes around RNU4-54P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-54P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-54P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU4-54P Gene

Proteins for RNU4-54P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU4-54P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-54P Gene

Domains & Families for RNU4-54P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-54P Gene

Function for RNU4-54P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-54P Gene

Localization for RNU4-54P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-54P Gene

Pathways & Interactions for RNU4-54P Gene

PathCards logo

SuperPathways for RNU4-54P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU4-54P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-54P Gene

Drugs & Compounds for RNU4-54P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU4-54P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU4-54P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-54P Gene

No ASD Table

Relevant External Links for RNU4-54P Gene

GeneLoc Exon Structure for
RNU4-54P

Expression for RNU4-54P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-54P Gene

mRNA expression in normal human tissues for RNU4-54P Gene
mRNA expression by GTEx for RNU4-54P Gene
genes like me logo Genes that share expression patterns with RNU4-54P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-54P Gene

Orthologs for RNU4-54P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-54P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U4 31
  • 85 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia U4 31
  • 77 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U4 31
  • 62 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm22249 31
  • 54 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia U4 31
  • 44 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia U4 31
  • 40 (a)
 OneToOne
sea squirt
(Ciona savignyi)
 Ascidiacea U4 31
  • 50 (a)
 OneToMany
Species where no ortholog for RNU4-54P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-54P Gene

ENSEMBL:
Gene Tree for RNU4-54P (if available)
TreeFam:
Gene Tree for RNU4-54P (if available)

Paralogs for RNU4-54P Gene

No data available for Paralogs for RNU4-54P Gene

Variants for RNU4-54P Gene

Additional Variant Information for RNU4-54P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-54P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-54P Gene

Disorders for RNU4-54P Gene

No disorders were found for RNU4-54P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-54P Gene

Publications for RNU4-54P Gene

No publications were found for RNU4-54P Gene.

No data available for Mastermind for RNU4-54P Gene

Products for RNU4-54P Gene

Sources for RNU4-54P Gene