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Aliases for RNU4-49P Gene

Subcategory (RNA class) for RNU4-49P Gene

snRNA

Aliases for RNU4-49P Gene

  • RNA, U4 Small Nuclear 49, Pseudogene 2 3 5

External Ids for RNU4-49P Gene

ORGUL Members for RNU4-49P Gene

Previous GeneCards Identifiers for RNU4-49P Gene

  • GC02M048569

Summaries for RNU4-49P Gene

GeneCards Summary for RNU4-49P Gene

RNU4-49P (RNA, U4 Small Nuclear 49, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-49P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-49P Gene

Genomics for RNU4-49P Gene

GeneHancer (GH) Regulatory Elements for RNU4-49P Gene

Promoters and enhancers for RNU4-49P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I048339 Enhancer 0.7 Ensembl dbSUPER 550.8 +1.3 1325 0.2 ZNF316 MZF1 MAFG MAFK EMSY GC02M048341 RNU4-49P FOXN2 PPP1R21 GC02P048318
GH02I048341 Enhancer 0.5 Ensembl dbSUPER 550.8 -1.0 -975 0.4 NR2F2 GC02M048341 RNU4-49P PPP1R21 GTF2A1L FOXN2 GC02M048365
GH02I048340 Enhancer 0.5 dbSUPER 550.8 +0.3 309 1.6 ZNF316 HLF MAFG CEBPG ZBTB33 MAFK EMSY GC02M048341 RNU4-49P PPP1R21 FOXN2 GC02P048318
GH02I048342 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.8 -4.0 -4048 4.4 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ETS1 YY1 SLC30A9 ATF7 FOS FOXN2 PPP1R21 MSH6 RPL36AP15 GTF2A1L GC02M048341 RNU4-49P GC02M048365
GH02I048356 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.2 -16209 1.7 RFX1 ZNF592 CHAMP1 CC2D1A ZNF217 ZNF316 POLR2A GABPB1 ZBTB33 MYC PPP1R21 FOXN2 FBXO11 GC02M048365 GC02M048341 RNU4-49P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-49P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-49P Gene

Genomic Locations for RNU4-49P Gene
chr2:48,340,687-48,340,826
(GRCh38/hg38)
Size:
140 bases
Orientation:
Minus strand
chr2:48,567,826-48,567,965
(GRCh37/hg19)

Genomic View for RNU4-49P Gene

Genes around RNU4-49P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-49P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-49P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-49P Gene

Proteins for RNU4-49P Gene

Post-translational modifications for RNU4-49P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-49P Gene

Domains & Families for RNU4-49P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-49P Gene

Function for RNU4-49P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-49P Gene

Localization for RNU4-49P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-49P Gene

Pathways & Interactions for RNU4-49P Gene

SuperPathways for RNU4-49P Gene

No Data Available

Interacting Proteins for RNU4-49P Gene

Gene Ontology (GO) - Biological Process for RNU4-49P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-49P Gene

Drugs & Compounds for RNU4-49P Gene

No Compound Related Data Available

Transcripts for RNU4-49P Gene

mRNA/cDNA for RNU4-49P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-49P Gene

No ASD Table

Relevant External Links for RNU4-49P Gene

GeneLoc Exon Structure for
RNU4-49P
ECgene alternative splicing isoforms for
RNU4-49P

Expression for RNU4-49P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-49P Gene

genes like me logo Genes that share expression patterns with RNU4-49P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-49P Gene

Orthologs for RNU4-49P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU4-49P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22005 34
  • 81 (a)
OneToMany
Species where no ortholog for RNU4-49P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-49P Gene

ENSEMBL:
Gene Tree for RNU4-49P (if available)
TreeFam:
Gene Tree for RNU4-49P (if available)

Paralogs for RNU4-49P Gene

No data available for Paralogs for RNU4-49P Gene

Variants for RNU4-49P Gene

Additional Variant Information for RNU4-49P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-49P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-49P Gene

Disorders for RNU4-49P Gene

No disorders were found for RNU4-49P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-49P Gene

Publications for RNU4-49P Gene

No publications were found for RNU4-49P Gene.

Products for RNU4-49P Gene

Sources for RNU4-49P Gene

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