Aliases for RNU4-47P Gene

Aliases for RNU4-47P Gene

  • RNA, U4 Small Nuclear 47, Pseudogene 2 3 5

External Ids for RNU4-47P Gene

Previous GeneCards Identifiers for RNU4-47P Gene

  • GC17M075149

Summaries for RNU4-47P Gene

GeneCards Summary for RNU4-47P Gene

RNU4-47P (RNA, U4 Small Nuclear 47, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-47P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-47P Gene

Genomics for RNU4-47P Gene

GeneHancer (GH) Regulatory Elements for RNU4-47P Gene

Promoters and enhancers for RNU4-47P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J077151 Enhancer 0.6 Ensembl ENCODE dbSUPER 750.6 +1.3 1279 2 POLR2A RF00015-034 RNU4-47P LOC105371901 SEC14L1
GH17J077152 Enhancer 0.3 ENCODE dbSUPER 750.6 -0.6 -632 1.5 RF00015-034 RNU4-47P SEC14L1 MF281429-002
GH17J077114 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.7 +28.5 28473 18.7 SIN3A SREBF1 FOXA1 MLX RBPJ SMARCE1 POLR2A USF2 NR2F6 ATF1 HSALNG0118902 SRSF2 MFSD11 METTL23 SEPTIN9 ENSG00000267546 RNU4-47P SNHG16 SPHK1 ENSG00000261335
GH17J077106 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.5 +43.0 42972 5.9 ZNF24 SP1 ZBTB6 LCORL RBPJ SMARCE1 NR2F6 ATF1 ETV6 RELA SEC14L1 SRSF2 RNU4-47P RHBDF2 SEPTIN9 JMJD6 QRICH2 lnc-MGAT5B-4 lnc-MGAT5B-3 LOC105371900
GH17J077233 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 11.8 -82.2 -82161 3.3 ZNF785 ZBTB6 SMARCE1 ATF1 ZNF362 ZNF133 CC2D1A ETV6 ZNF701 TEAD4 SRSF2 SNHG20 SEPTIN9 METTL23 TNRC6C ENSG00000261335 ENSG00000267546 RNU4-47P MFSD11 LINC02080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-47P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-47P Gene

Genomic Locations for RNU4-47P Gene
chr17:77,152,561-77,152,674
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand
chr17:75,148,643-75,148,756
(GRCh37/hg19)
Size:
114 bases
Orientation:
Minus strand

Genomic View for RNU4-47P Gene

Genes around RNU4-47P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-47P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-47P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-47P Gene

Proteins for RNU4-47P Gene

Post-translational modifications for RNU4-47P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-47P Gene

Domains & Families for RNU4-47P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-47P Gene

Function for RNU4-47P Gene

Phenotypes From GWAS Catalog for RNU4-47P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-47P Gene

Localization for RNU4-47P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-47P Gene

Pathways & Interactions for RNU4-47P Gene

PathCards logo

SuperPathways for RNU4-47P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4-47P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-47P Gene

Drugs & Compounds for RNU4-47P Gene

No Compound Related Data Available

Transcripts for RNU4-47P Gene

mRNA/cDNA for RNU4-47P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-47P Gene

No ASD Table

Relevant External Links for RNU4-47P Gene

GeneLoc Exon Structure for
RNU4-47P
ECgene alternative splicing isoforms for
RNU4-47P

Expression for RNU4-47P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-47P Gene

genes like me logo Genes that share expression patterns with RNU4-47P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-47P Gene

Orthologs for RNU4-47P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU4-47P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 33
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia U4 33
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U4 33
  • 56 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22985 33
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U4 33
  • 35 (a)
OneToOne
Species where no ortholog for RNU4-47P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-47P Gene

ENSEMBL:
Gene Tree for RNU4-47P (if available)
TreeFam:
Gene Tree for RNU4-47P (if available)

Paralogs for RNU4-47P Gene

No data available for Paralogs for RNU4-47P Gene

Variants for RNU4-47P Gene

Additional Variant Information for RNU4-47P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-47P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-47P Gene

Disorders for RNU4-47P Gene

No disorders were found for RNU4-47P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-47P Gene

Publications for RNU4-47P Gene

No publications were found for RNU4-47P Gene.

Products for RNU4-47P Gene

Sources for RNU4-47P Gene