Aliases for RNU4-46P Gene

Aliases for RNU4-46P Gene

  • RNA, U4 Small Nuclear 46, Pseudogene 2 3 5

External Ids for RNU4-46P Gene

Previous GeneCards Identifiers for RNU4-46P Gene

  • GC16P019510

Summaries for RNU4-46P Gene

GeneCards Summary for RNU4-46P Gene

RNU4-46P (RNA, U4 Small Nuclear 46, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-46P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-46P Gene

Genomics for RNU4-46P Gene

GeneHancer (GH) Regulatory Elements for RNU4-46P Gene

Promoters and enhancers for RNU4-46P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J019496 Enhancer 0.3 Ensembl 500.7 -1.1 -1110 1.8 MAFK MAFG RF00015-028 RNU4-46P CCP110 KNOP1 L13714-171 TMC5
GH16J019110 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 -383.1 -383101 10.1 FOXK2 CTCF TCF12 USF1 POLR2G NCOR1 GTF2E2 JUND PHF8 FOS SYT17 ENSG00000261427 ITPRIPL2 RPS15A COQ7 RNU4-46P ENSG00000278389 RF00017-1999 piR-57460-248 ENSG00000261759
GH16J019392 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 11.3 -103.5 -103522 5.5 ZNF217 TCF12 ZNF10 POLR2A AFF1 RFX1 HES1 CTBP1 GATAD2B FOXA2 TMC5 ENSG00000280265 LOC105371114 SYT17 RNU4-46P COQ7 ENSG00000259925
GH16J019093 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 -403.6 -403559 3.3 FOXK2 CTCF POLR2G EP300 ZBTB25 MYC TGIF2 TEAD1 ZBTB26 ZKSCAN8 COQ7 SYT17 RNU4-46P ENSG00000260430 ENSG00000278389
GH16J019209 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.6 -288.8 -288810 8 EP300 RELA MEF2C RAD21 TRIM22 POLR2A BCL11A TCF12 FOXA2 CBFB SYT17 COQ7 RNU4-46P SMG1 piR-31534-232 ENSG00000286790
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-46P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-46P Gene

Genomic Locations for RNU4-46P Gene
chr16:19,498,610-19,498,747
(GRCh38/hg38)
Size:
138 bases
Orientation:
Plus strand
chr16:19,509,932-19,510,069
(GRCh37/hg19)
Size:
138 bases
Orientation:
Plus strand

Genomic View for RNU4-46P Gene

Genes around RNU4-46P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-46P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-46P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-46P Gene

Proteins for RNU4-46P Gene

Post-translational modifications for RNU4-46P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-46P Gene

Domains & Families for RNU4-46P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-46P Gene

Function for RNU4-46P Gene

Phenotypes From GWAS Catalog for RNU4-46P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-46P Gene

Localization for RNU4-46P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-46P Gene

Pathways & Interactions for RNU4-46P Gene

PathCards logo

SuperPathways for RNU4-46P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RNU4-46P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-46P Gene

Drugs & Compounds for RNU4-46P Gene

No Compound Related Data Available

Transcripts for RNU4-46P Gene

mRNA/cDNA for RNU4-46P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-46P Gene

No ASD Table

Relevant External Links for RNU4-46P Gene

GeneLoc Exon Structure for
RNU4-46P

Expression for RNU4-46P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-46P Gene

mRNA differential expression in normal tissues according to GTEx for RNU4-46P Gene

This gene is overexpressed in Minor Salivary Gland (x9.9), Small Intestine - Terminal Ileum (x9.8), Stomach (x6.7), Colon - Transverse (x6.6), Lung (x5.3), and Prostate (x4.7).
genes like me logo Genes that share expression patterns with RNU4-46P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-46P Gene

Orthologs for RNU4-46P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RNU4-46P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 31
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22005 31
  • 79 (a)
OneToMany
Species where no ortholog for RNU4-46P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU4-46P Gene

ENSEMBL:
Gene Tree for RNU4-46P (if available)
TreeFam:
Gene Tree for RNU4-46P (if available)

Paralogs for RNU4-46P Gene

No data available for Paralogs for RNU4-46P Gene

Variants for RNU4-46P Gene

Additional Variant Information for RNU4-46P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-46P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-46P Gene

Disorders for RNU4-46P Gene

No disorders were found for RNU4-46P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-46P Gene

Publications for RNU4-46P Gene

No publications were found for RNU4-46P Gene.

No data available for Mastermind for RNU4-46P Gene

Products for RNU4-46P Gene

Sources for RNU4-46P Gene