RNU4-27P Gene (Pseudogene)

RNA, U4 Small Nuclear 27, Pseudogene

GC01M036402
GIFtS:
7
See more...

Aliases for RNU4-27P Gene

Aliases for RNU4-27P Gene

  • RNA, U4 Small Nuclear 27, Pseudogene 2 3 5
  • RNU4-27P 5

External Ids for RNU4-27P Gene

Previous GeneCards Identifiers for RNU4-27P Gene

  • GC01M036869

Summaries for RNU4-27P Gene

GeneCards Summary for RNU4-27P Gene

RNU4-27P (RNA, U4 Small Nuclear 27, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-27P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU4-27P Gene

Genomics for RNU4-27P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU4-27P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J036400 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.5 1458 2 HNRNPL GATAD2A PRDM10 ZNF629 TFE3 SOX13 ZNF692 POLR2A JUND DDX20 RNU4-27P OSCP1 LSM10 lnc-SH3D21-8
GH01J036403 Enhancer 0.3 Ensembl 600.7 -1.0 -1042 0.2 ZBTB33 MN296806 RNU4-27P OSCP1 LSM10
GH01J036222 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +178.4 178427 4.7 BRCA1 SP1 CREB1 GATAD2A CTCF ATF7 PRDM10 REST ZNF629 TFE3 THRAP3 lnc-TRAPPC3-2 EVA1B ENSG00000271554 RPL5P4 MAP7D1 TRAPPC3 CLSPN COL8A2 ADPRS
GH01J036370 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.7 +28.8 28763 6.1 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 POLR2A RF00017-158 CSF3R STK40 AGO3 LSM10 TRAPPC3 RNU4-27P SNORA63C OSCP1 ENSG00000223944
GH01J036299 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 +99.1 99066 8.8 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF ARID3A TEAD4 PRDM10 AGO3 EVA1B THRAP3 RPL5P4 ENSG00000271554 STK40 SNORA63C OSCP1 MAP7D1 TRAPPC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU4-27P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU4-27P Gene

Genomic Locations for RNU4-27P Gene
chr1:36,402,721-36,402,859
(GRCh38/hg38)
Size:
139 bases
Orientation:
Minus strand
chr1:36,868,322-36,868,460
(GRCh37/hg19)
Size:
139 bases
Orientation:
Minus strand

Genomic View for RNU4-27P Gene

Genes around RNU4-27P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-27P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-27P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU4-27P Gene

Proteins for RNU4-27P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU4-27P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-27P Gene

Domains & Families for RNU4-27P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU4-27P Gene

Function for RNU4-27P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU4-27P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-27P Gene

Localization for RNU4-27P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-27P Gene

Pathways & Interactions for RNU4-27P Gene

PathCards logo

SuperPathways for RNU4-27P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU4-27P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU4-27P Gene

Drugs & Compounds for RNU4-27P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU4-27P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU4-27P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-27P Gene

No ASD Table

Relevant External Links for RNU4-27P Gene

GeneLoc Exon Structure for
RNU4-27P

Expression for RNU4-27P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU4-27P Gene

mRNA expression in normal human tissues for RNU4-27P Gene
mRNA expression by GTEx for RNU4-27P Gene
genes like me logo Genes that share expression patterns with RNU4-27P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-27P Gene

Orthologs for RNU4-27P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-27P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia U4 31
  • 99 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia U4 31
  • 59 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii U4 31
  • 64 (a)
 ManyToMany
Species where no ortholog for RNU4-27P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU4-27P Gene

ENSEMBL:
Gene Tree for RNU4-27P (if available)
TreeFam:
Gene Tree for RNU4-27P (if available)

Paralogs for RNU4-27P Gene

No data available for Paralogs for RNU4-27P Gene

Variants for RNU4-27P Gene

Additional Variant Information for RNU4-27P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-27P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-27P Gene

Disorders for RNU4-27P Gene

No disorders were found for RNU4-27P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-27P Gene

Publications for RNU4-27P Gene

No publications were found for RNU4-27P Gene.

No data available for Mastermind for RNU4-27P Gene

Products for RNU4-27P Gene

Sources for RNU4-27P Gene