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Aliases for RNU4-27P Gene

Aliases for RNU4-27P Gene

  • RNA, U4 Small Nuclear 27, Pseudogene 2 3 5

External Ids for RNU4-27P Gene

Previous GeneCards Identifiers for RNU4-27P Gene

  • GC01M036869

Summaries for RNU4-27P Gene

GeneCards Summary for RNU4-27P Gene

RNU4-27P (RNA, U4 Small Nuclear 27, Pseudogene) is a Pseudogene.

Additional gene information for RNU4-27P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-27P Gene

Genomics for RNU4-27P Gene

GeneHancer (GH) Regulatory Elements for RNU4-27P Gene

Promoters and enhancers for RNU4-27P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I036400 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.4 1436 2 ZFP64 ARID4B SIN3A DMAP1 POLR2B CBX5 E2F8 ZNF143 KLF13 SP3 RNU4-27P OSCP1 LSM10
GH01I036299 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.9 +99.1 99076 8.8 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 SH3D21 STK40 SNORA63C OSCP1 TRAPPC3 MAP7D1 LSM10 RNU4-27P LOC100128093 TEKT2
GH01I036222 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 +178.5 178467 4.7 CLOCK MLX FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 THRAP3 MAP7D1 TRAPPC3 COL8A2 ADPRHL2 LOC100128093 TEKT2 LSM10 RNU4-27P SNORA63C
GH01I036370 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +26.8 26779 10.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 CSF3R STK40 AGO3 LSM10 RNU4-27P SNORA63C OSCP1 ENSG00000223944 EVA1B LOC105378647
GH01I036169 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +228.2 228212 10.1 BCOR CTCF USF1 JUN BACH1 SIN3A ZMYM3 BMI1 RAD21 ZNF664 MAP7D1 ENSG00000116883 COL8A2 ADPRHL2 LOC100128093 TEKT2 SH3D21 EVA1B RNU4-27P LSM10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-27P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-27P Gene

Genomic Locations for RNU4-27P Gene
chr1:36,402,721-36,402,859
(GRCh38/hg38)
Size:
139 bases
Orientation:
Minus strand
chr1:36,868,322-36,868,460
(GRCh37/hg19)

Genomic View for RNU4-27P Gene

Genes around RNU4-27P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-27P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-27P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-27P Gene

Proteins for RNU4-27P Gene

Post-translational modifications for RNU4-27P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-27P Gene

Domains & Families for RNU4-27P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-27P Gene

Function for RNU4-27P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-27P Gene

Localization for RNU4-27P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-27P Gene

Pathways & Interactions for RNU4-27P Gene

SuperPathways for RNU4-27P Gene

No Data Available

Interacting Proteins for RNU4-27P Gene

Gene Ontology (GO) - Biological Process for RNU4-27P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-27P Gene

Drugs & Compounds for RNU4-27P Gene

No Compound Related Data Available

Transcripts for RNU4-27P Gene

mRNA/cDNA for RNU4-27P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-27P Gene

No ASD Table

Relevant External Links for RNU4-27P Gene

GeneLoc Exon Structure for
RNU4-27P
ECgene alternative splicing isoforms for
RNU4-27P

Expression for RNU4-27P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-27P Gene

genes like me logo Genes that share expression patterns with RNU4-27P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-27P Gene

Orthologs for RNU4-27P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-27P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 34
  • 59 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 34
  • 64 (a)
ManyToMany
Species where no ortholog for RNU4-27P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-27P Gene

ENSEMBL:
Gene Tree for RNU4-27P (if available)
TreeFam:
Gene Tree for RNU4-27P (if available)

Paralogs for RNU4-27P Gene

No data available for Paralogs for RNU4-27P Gene

Variants for RNU4-27P Gene

Additional Variant Information for RNU4-27P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-27P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-27P Gene

Disorders for RNU4-27P Gene

No disorders were found for RNU4-27P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-27P Gene

Publications for RNU4-27P Gene

No publications were found for RNU4-27P Gene.

Products for RNU4-27P Gene

Sources for RNU4-27P Gene

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