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Aliases for RNU4-21P Gene

Subcategory (RNA class) for RNU4-21P Gene

snRNA

Aliases for RNU4-21P Gene

  • RNA, U4 Small Nuclear 21, Pseudogene 2 3 5

External Ids for RNU4-21P Gene

ORGUL Members for RNU4-21P Gene

Previous GeneCards Identifiers for RNU4-21P Gene

  • GC01M229672

Summaries for RNU4-21P Gene

GeneCards Summary for RNU4-21P Gene

RNU4-21P (RNA, U4 Small Nuclear 21, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU4-21P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU4-21P Gene

Genomics for RNU4-21P Gene

GeneHancer (GH) Regulatory Elements for RNU4-21P Gene

Promoters and enhancers for RNU4-21P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I229278 Enhancer 0.8 dbSUPER 9.6 +256.1 256105 2 PKNOX1 ATF1 ARID4B THRB RARA ZNF121 ZNF366 SMARCA5 ZNF680 RXRA CCSAP SPHAR ENSG00000237481 RNU6-180P TMEM78 ACTA1 ABCB10 RNU4-21P RAB4A GC01P229305
GH01I229478 Enhancer 0.7 ENCODE 10.8 +55.1 55119 3 HDGF MEIS2 PKNOX1 EBF1 BATF ZNF766 POLR2A ETV6 IKZF2 RUNX3 HMGN2P19 TMEM78 LOC105373159 RAB4A ACTA1 RNU4-21P ABCB10 RNU6-180P CCSAP GC01M229453
GH01I229482 Enhancer 0.7 ENCODE 10.8 +53.0 53030 0.2 CTCF ZNF654 USF1 TFE3 TRIM22 USF2 REST ZNF2 RAD21 MITF TMEM78 RNU4-21P ACTA1 ABCB10 CCSAP GC01M229453 NUP133
GH01I229563 Enhancer 0.6 Ensembl 10.5 -28.4 -28412 0.8 SCRT1 L3MBTL2 ZNF189 MAX ATF2 ZNF366 GLI2 ZNF629 SCRT2 ZSCAN5C HMGN2P19 RNU4-21P ABCB10
GH01I229339 Enhancer 0.6 ENCODE 9.4 +195.1 195141 1.8 ZNF362 ZNF280D ZNF10 MZF1 OSR2 ZNF316 ZNF512 ZNF580 MLLT1 TRIM24 ENSG00000237481 RNU6-180P RNU4-21P ABCB10 CCSAP GC01M228906
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU4-21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU4-21P Gene

Genomic Locations for RNU4-21P Gene
chr1:229,535,064-229,535,189
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr1:229,670,811-229,670,936
(GRCh37/hg19)

Genomic View for RNU4-21P Gene

Genes around RNU4-21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU4-21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU4-21P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU4-21P Gene

Proteins for RNU4-21P Gene

Post-translational modifications for RNU4-21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU4-21P Gene

Domains & Families for RNU4-21P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU4-21P Gene

Function for RNU4-21P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU4-21P Gene

Localization for RNU4-21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU4-21P Gene

Pathways & Interactions for RNU4-21P Gene

SuperPathways for RNU4-21P Gene

No Data Available

Interacting Proteins for RNU4-21P Gene

Gene Ontology (GO) - Biological Process for RNU4-21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU4-21P Gene

Drugs & Compounds for RNU4-21P Gene

No Compound Related Data Available

Transcripts for RNU4-21P Gene

mRNA/cDNA for RNU4-21P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU4-21P Gene

No ASD Table

Relevant External Links for RNU4-21P Gene

GeneLoc Exon Structure for
RNU4-21P
ECgene alternative splicing isoforms for
RNU4-21P

Expression for RNU4-21P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU4-21P Gene

genes like me logo Genes that share expression patterns with RNU4-21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU4-21P Gene

Orthologs for RNU4-21P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU4-21P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U4 34
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U4 34
  • 61 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U4 34
  • 65 (a)
ManyToMany
Species where no ortholog for RNU4-21P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU4-21P Gene

ENSEMBL:
Gene Tree for RNU4-21P (if available)
TreeFam:
Gene Tree for RNU4-21P (if available)

Paralogs for RNU4-21P Gene

No data available for Paralogs for RNU4-21P Gene

Variants for RNU4-21P Gene

Additional Variant Information for RNU4-21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU4-21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU4-21P Gene

Disorders for RNU4-21P Gene

No disorders were found for RNU4-21P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU4-21P Gene

Publications for RNU4-21P Gene

No publications were found for RNU4-21P Gene.

Products for RNU4-21P Gene

Sources for RNU4-21P Gene

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