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Aliases for RNU2-71P Gene

Subcategory (RNA class) for RNU2-71P Gene

snRNA

Aliases for RNU2-71P Gene

  • RNA, U2 Small Nuclear 71, Pseudogene 2 3 5

External Ids for RNU2-71P Gene

ORGUL Members for RNU2-71P Gene

Previous GeneCards Identifiers for RNU2-71P Gene

  • GC08M081499
  • GC00U935655

Summaries for RNU2-71P Gene

GeneCards Summary for RNU2-71P Gene

RNU2-71P (RNA, U2 Small Nuclear 71, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-71P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-71P Gene

Genomics for RNU2-71P Gene

GeneHancer (GH) Regulatory Elements for RNU2-71P Gene

Promoters and enhancers for RNU2-71P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I080240 Enhancer 1.1 Ensembl ENCODE 9.8 +345.0 344972 0.8 ELF3 RB1 ARID4B ZNF76 SIN3A ZNF2 IRF4 ZNF48 RAD21 RARA MIR5708 ENSG00000206649 ENSG00000251867 ZBTB10 RNU6-1213P RNU2-71P LOC105375920 GC08M080196
GH08I080613 Enhancer 0.6 Ensembl 10.9 -27.4 -27362 0.5 MEF2D CTCF ZBTB48 TRIM22 REST RCOR1 ZNF600 RAD21 CHD2 RN7SL107P RNU2-71P TPD52 GC08P080610
GH08I080543 Enhancer 0.5 ENCODE 10.9 +42.5 42532 0.2 POLR2A EGR1 SP2 PRDM10 ZBTB8A ENSG00000260317 RNU2-71P RNU6-1213P RPSAP47
GH08I080612 Enhancer 0.5 ENCODE 10.9 -27.0 -26988 0.2 MEF2D CTCF ZNF654 TRIM22 SMC3 REST RAD21 GC08P080610 RN7SL107P RNU2-71P TPD52
GH08I080576 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 +7.5 7503 3.1 FOXA2 SIN3A FEZF1 ZNF48 YY1 GLIS2 ZNF202 SP3 REST ZNF610 TPD52 GC08M080586 OCIAD2P1 RNU2-71P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-71P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-71P Gene

Genomic Locations for RNU2-71P Gene
chr8:80,585,585-80,585,773
(GRCh38/hg38)
Size:
189 bases
Orientation:
Minus strand

Genomic View for RNU2-71P Gene

Genes around RNU2-71P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-71P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-71P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-71P Gene

Proteins for RNU2-71P Gene

Post-translational modifications for RNU2-71P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-71P Gene

Domains & Families for RNU2-71P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-71P Gene

Function for RNU2-71P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-71P Gene

Localization for RNU2-71P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-71P Gene

Pathways & Interactions for RNU2-71P Gene

SuperPathways for RNU2-71P Gene

No Data Available

Interacting Proteins for RNU2-71P Gene

Gene Ontology (GO) - Biological Process for RNU2-71P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-71P Gene

Drugs & Compounds for RNU2-71P Gene

No Compound Related Data Available

Transcripts for RNU2-71P Gene

mRNA/cDNA for RNU2-71P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-71P Gene

No ASD Table

Relevant External Links for RNU2-71P Gene

GeneLoc Exon Structure for
RNU2-71P
ECgene alternative splicing isoforms for
RNU2-71P

Expression for RNU2-71P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-71P Gene

genes like me logo Genes that share expression patterns with RNU2-71P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-71P Gene

Orthologs for RNU2-71P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-71P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 34
  • 79 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34
  • 69 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26256 34
  • 68 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U2 34
  • 67 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U2 34
  • 67 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U2 34 34 34 34
  • 64 (a)
ManyToMany
Species where no ortholog for RNU2-71P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-71P Gene

ENSEMBL:
Gene Tree for RNU2-71P (if available)
TreeFam:
Gene Tree for RNU2-71P (if available)

Paralogs for RNU2-71P Gene

No data available for Paralogs for RNU2-71P Gene

Variants for RNU2-71P Gene

Additional Variant Information for RNU2-71P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-71P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-71P Gene

Disorders for RNU2-71P Gene

No disorders were found for RNU2-71P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-71P Gene

Publications for RNU2-71P Gene

No publications were found for RNU2-71P Gene.

Products for RNU2-71P Gene

Sources for RNU2-71P Gene

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