Aliases for RNU2-6P Gene

Aliases for RNU2-6P Gene

  • RNA, U2 Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU2-6P Gene

Previous GeneCards Identifiers for RNU2-6P Gene

  • GC00U933922
  • GC13M046949

Summaries for RNU2-6P Gene

GeneCards Summary for RNU2-6P Gene

RNU2-6P (RNA, U2 Small Nuclear 6, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-6P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-6P Gene

Genomics for RNU2-6P Gene

GeneHancer (GH) Regulatory Elements for RNU2-6P Gene

Promoters and enhancers for RNU2-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046163 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +199.8 199794 21.8 ZNF24 CTCF SREBF1 SMARCE1 POLR2A NR2F6 ZNF362 MYC ETV6 ELF1 LCP1 ERICH6B RNU2-6P RUBCNL LRRC63 TPT1-AS1 ZC3H13 piR-34822-077 RF00017-1417 lnc-CPB2-2
GH13J046352 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +20.7 20689 5.4 JUND ETV6 RELA MNT TFE3 SMARCA4 TRIM24 ZNF644 FOSL2 IKZF1 LINC01198 COG3 RNU2-6P LRCH1 LCP1 RUBCNL RF00017-1418 LOC105370194
GH13J046341 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11.6 +33.1 33133 1.7 ETV6 CREM ZBED1 IKZF1 IKZF2 EED BCL11A RUNX3 BCLAF1 JUNB LINC01198 RNU2-6P LCP1 RF00017-1418 LOC105370194 RUBCNL
GH13J046338 Enhancer 1 FANTOM5 ENCODE dbSUPER 11.8 +35.5 35473 1.3 ETV6 IKZF1 IKZF2 EED RUNX3 JUNB STAT5A BATF ATF2 OR7E101P LINC01198 RNU2-6P LCP1 LOC105370194 RF00017-1418
GH13J046604 Enhancer 1.1 ENCODE dbSUPER 10.1 -232.7 -232670 6.2 MLX RBPJ NR2F1 NR2F6 MIXL1 ETV6 HLF TEAD4 ZNF652 RERE LRCH1 RNU2-6P RUBCNL RF00017-1419 piR-32559-107
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-6P Gene

Genomic Locations for RNU2-6P Gene
chr13:46,374,401-46,374,590
(GRCh38/hg38)
Size:
190 bases
Orientation:
Minus strand
chr13:46,948,536-46,948,725
(GRCh37/hg19)
Size:
190 bases
Orientation:
Minus strand

Genomic View for RNU2-6P Gene

Genes around RNU2-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-6P Gene

Proteins for RNU2-6P Gene

Post-translational modifications for RNU2-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-6P Gene

Domains & Families for RNU2-6P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-6P Gene

Function for RNU2-6P Gene

Phenotypes From GWAS Catalog for RNU2-6P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-6P Gene

Localization for RNU2-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-6P Gene

Pathways & Interactions for RNU2-6P Gene

PathCards logo

SuperPathways for RNU2-6P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU2-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-6P Gene

Drugs & Compounds for RNU2-6P Gene

No Compound Related Data Available

Transcripts for RNU2-6P Gene

mRNA/cDNA for RNU2-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-6P Gene

No ASD Table

Relevant External Links for RNU2-6P Gene

GeneLoc Exon Structure for
RNU2-6P
ECgene alternative splicing isoforms for
RNU2-6P

Expression for RNU2-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-6P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-6P Gene

This gene is overexpressed in Whole Blood (x16.5) and Small Intestine - Terminal Ileum (x8.3).
genes like me logo Genes that share expression patterns with RNU2-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-6P Gene

Orthologs for RNU2-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 33
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 33 33 33 33 33
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U2 33
  • 91 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25360 33
  • 90 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U2 33
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 33
  • 81 (a)
OneToMany
Species where no ortholog for RNU2-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-6P Gene

ENSEMBL:
Gene Tree for RNU2-6P (if available)
TreeFam:
Gene Tree for RNU2-6P (if available)

Paralogs for RNU2-6P Gene

No data available for Paralogs for RNU2-6P Gene

Variants for RNU2-6P Gene

Additional Variant Information for RNU2-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-6P Gene

Disorders for RNU2-6P Gene

No disorders were found for RNU2-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-6P Gene

Publications for RNU2-6P Gene

No publications were found for RNU2-6P Gene.

Products for RNU2-6P Gene

Sources for RNU2-6P Gene