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Aliases for RNU2-6P Gene

Subcategory (RNA class) for RNU2-6P Gene

snRNA

Aliases for RNU2-6P Gene

  • RNA, U2 Small Nuclear 6, Pseudogene 2 3 5

External Ids for RNU2-6P Gene

ORGUL Members for RNU2-6P Gene

Previous GeneCards Identifiers for RNU2-6P Gene

  • GC00U933922
  • GC13M046949

Summaries for RNU2-6P Gene

GeneCards Summary for RNU2-6P Gene

RNU2-6P (RNA, U2 Small Nuclear 6, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-6P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-6P Gene

Genomics for RNU2-6P Gene

GeneHancer (GH) Regulatory Elements for RNU2-6P Gene

Promoters and enhancers for RNU2-6P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I046163 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 +199.8 199794 21.8 HDGF PKNOX1 SMAD1 ZNF2 IRF4 YY1 POLR2B ZNF766 ZNF143 JUNB LCP1 ERICH6B COG3 RNU2-6P RUBCNL LRRC63 TPT1-AS1 ZC3H13 RN7SL288P LOC105370192
GH13I046338 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +34.2 34199 3.9 ZBED1 JUNB BATF ATF2 IRF4 BCL11A IKZF1 ATF7 ETV6 PRDM10 OR7E101P LINC01198 RNU2-6P LCP1 RUBCNL GC13M046284 LOC105370194
GH13I046403 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -30.2 -30150 2.3 CTCF PKNOX1 RFX1 ZNF341 MAX ETV6 MYC SPI1 OR7E101P LCP1 RNU2-6P LINC01198 RUBCNL ZC3H13 GC13P046411 GC13P046380
GH13I046604 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 -232.7 -232670 6.2 PKNOX1 FOXA2 MLX FEZF1 DMAP1 ZNF48 ETS1 SLC30A9 ZNF143 ATF7 LRCH1 RNU2-6P RUBCNL GC13P046617 GC13P046577
GH13I046320 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.9 +53.3 53304 1.8 CTCF ZNF654 TRIM22 REST RAD21 YY1 RELA ZNF512B MTA1 ZNF366 LOC105370194 RNU2-6P LINC01198 LINC00563 GC13M046284
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-6P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-6P Gene

Genomic Locations for RNU2-6P Gene
chr13:46,374,401-46,374,590
(GRCh38/hg38)
Size:
190 bases
Orientation:
Minus strand
chr13:46,948,536-46,948,725
(GRCh37/hg19)

Genomic View for RNU2-6P Gene

Genes around RNU2-6P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-6P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-6P Gene

Proteins for RNU2-6P Gene

Post-translational modifications for RNU2-6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-6P Gene

Domains & Families for RNU2-6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-6P Gene

Function for RNU2-6P Gene

Phenotypes From GWAS Catalog for RNU2-6P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-6P Gene

Localization for RNU2-6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-6P Gene

Pathways & Interactions for RNU2-6P Gene

SuperPathways for RNU2-6P Gene

No Data Available

Interacting Proteins for RNU2-6P Gene

Gene Ontology (GO) - Biological Process for RNU2-6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-6P Gene

Drugs & Compounds for RNU2-6P Gene

No Compound Related Data Available

Transcripts for RNU2-6P Gene

mRNA/cDNA for RNU2-6P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-6P Gene

No ASD Table

Relevant External Links for RNU2-6P Gene

GeneLoc Exon Structure for
RNU2-6P
ECgene alternative splicing isoforms for
RNU2-6P

Expression for RNU2-6P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-6P Gene

mRNA differential expression in normal tissues according to GTEx for RNU2-6P Gene

This gene is overexpressed in Whole Blood (x16.5) and Small Intestine - Terminal Ileum (x8.3).
genes like me logo Genes that share expression patterns with RNU2-6P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-6P Gene

Orthologs for RNU2-6P Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNU2-6P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34 34 34 34 34
  • 92 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia U2 34
  • 91 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25360 34
  • 90 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U2 34
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 34
  • 81 (a)
OneToMany
Species where no ortholog for RNU2-6P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-6P Gene

ENSEMBL:
Gene Tree for RNU2-6P (if available)
TreeFam:
Gene Tree for RNU2-6P (if available)

Paralogs for RNU2-6P Gene

No data available for Paralogs for RNU2-6P Gene

Variants for RNU2-6P Gene

Additional Variant Information for RNU2-6P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-6P Gene

Disorders for RNU2-6P Gene

No disorders were found for RNU2-6P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-6P Gene

Publications for RNU2-6P Gene

No publications were found for RNU2-6P Gene.

Products for RNU2-6P Gene

Sources for RNU2-6P Gene

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