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Aliases for RNU2-60P Gene

Aliases for RNU2-60P Gene

  • RNA, U2 Small Nuclear 60, Pseudogene 2 3 5

External Ids for RNU2-60P Gene

Previous GeneCards Identifiers for RNU2-60P Gene

  • GC11P111254
  • GC00U934834

Summaries for RNU2-60P Gene

GeneCards Summary for RNU2-60P Gene

RNU2-60P (RNA, U2 Small Nuclear 60, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-60P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-60P Gene

Genomics for RNU2-60P Gene

GeneHancer (GH) Regulatory Elements for RNU2-60P Gene

Promoters and enhancers for RNU2-60P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I111413 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 +33.5 33507 6.4 HDGF ELF3 PKNOX1 SMAD1 RB1 ARID4B BMI1 YBX1 BATF KLF5 LOC100132078 COLCA1 RNU2-60P COLCA2 BTG4 C11orf88 MIR34B MIR34C BCO2 GC11M111399
GH11I111423 Enhancer 1.1 ENCODE dbSUPER 10.6 +40.1 40059 0.2 ARID4B DMAP1 ZNF48 ZNF143 RUNX3 NFYC MXD4 REST MIER2 PPARG LOC644277 POU2AF1 COLCA1 COLCA2 RNU2-60P MIR34B MIR34C BTG4 C11orf88 LAYN
GH11I111424 Enhancer 1 ENCODE dbSUPER 10.6 +40.3 40299 0.2 RB1 DMAP1 THRB ZSCAN9 RAD21 SCRT2 ZNF143 BCLAF1 MIXL1 SMARCA5 LOC644277 POU2AF1 COLCA1 COLCA2 RNU2-60P MIR34B MIR34C BTG4 C11orf88 LAYN
GH11I111409 Enhancer 0.9 ENCODE dbSUPER 11.6 +26.8 26836 1.4 MAX EBF1 BATF IRF4 RELA NFATC1 ETV6 BCLAF1 IKZF2 RUNX3 RNU2-60P LOC100132078 COLCA1 BCO2 GC11M111399 GC11P111394 POU2AF1 BTG4
GH11I111427 Enhancer 0.9 FANTOM5 dbSUPER 10.6 +44.5 44540 0.4 PKNOX1 NFIB FEZF1 ZNF335 GATA3 GATA2 ZNF366 RCOR1 NFIA ZBTB11 COLCA1 POU2AF1 COLCA2 RNU2-60P BTG4 C11orf88 MIR34B MIR34C LAYN LOC100132078
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-60P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-60P Gene

Genomic Locations for RNU2-60P Gene
chr11:111,383,092-111,383,219
(GRCh38/hg38)
Size:
128 bases
Orientation:
Plus strand

Genomic View for RNU2-60P Gene

Genes around RNU2-60P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-60P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-60P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-60P Gene

Proteins for RNU2-60P Gene

Post-translational modifications for RNU2-60P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-60P Gene

Domains & Families for RNU2-60P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-60P Gene

Function for RNU2-60P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-60P Gene

Localization for RNU2-60P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-60P Gene

Pathways & Interactions for RNU2-60P Gene

SuperPathways for RNU2-60P Gene

No Data Available

Interacting Proteins for RNU2-60P Gene

Gene Ontology (GO) - Biological Process for RNU2-60P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-60P Gene

Drugs & Compounds for RNU2-60P Gene

No Compound Related Data Available

Transcripts for RNU2-60P Gene

mRNA/cDNA for RNU2-60P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-60P Gene

No ASD Table

Relevant External Links for RNU2-60P Gene

GeneLoc Exon Structure for
RNU2-60P
ECgene alternative splicing isoforms for
RNU2-60P

Expression for RNU2-60P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-60P Gene

genes like me logo Genes that share expression patterns with RNU2-60P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-60P Gene

Orthologs for RNU2-60P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-60P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U2 34
  • 69 (a)
OneToMany
cow
(Bos Taurus)
Mammalia U2 34
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25887 34
  • 56 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U2 34
  • 33 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia U2 34
  • 31 (a)
ManyToMany
Species where no ortholog for RNU2-60P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-60P Gene

ENSEMBL:
Gene Tree for RNU2-60P (if available)
TreeFam:
Gene Tree for RNU2-60P (if available)

Paralogs for RNU2-60P Gene

No data available for Paralogs for RNU2-60P Gene

Variants for RNU2-60P Gene

Additional Variant Information for RNU2-60P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-60P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-60P Gene

Disorders for RNU2-60P Gene

No disorders were found for RNU2-60P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-60P Gene

Publications for RNU2-60P Gene

No publications were found for RNU2-60P Gene.

Products for RNU2-60P Gene

Sources for RNU2-60P Gene

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