RNU2-58P Gene (Pseudogene)

RNA, U2 Small Nuclear 58, Pseudogene

GC17M059129
GIFtS:
7
See more...

Aliases for RNU2-58P Gene

Aliases for RNU2-58P Gene

  • RNA, U2 Small Nuclear 58, Pseudogene 2 3 5
  • RNU2-58P 5

External Ids for RNU2-58P Gene

Previous GeneCards Identifiers for RNU2-58P Gene

  • GC17M057208
  • GC00U935845

Summaries for RNU2-58P Gene

GeneCards Summary for RNU2-58P Gene

RNU2-58P (RNA, U2 Small Nuclear 58, Pseudogene) is a Pseudogene.

Additional gene information for RNU2-58P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RNU2-58P Gene

Genomics for RNU2-58P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RNU2-58P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J059151 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.3 -26.8 -26792 9.7 SP1 HNRNPL CREB1 GATAD2A ZBTB33 TEAD4 YBX1 PRDM10 ZNF629 TFE3 TRIM37 PRR11 SKA2 lnc-TRIM37-1-001 lnc-TRIM37-1-002 MKS1 TUBD1 NDUFB8P2 SMG8 RAD51C
GH17J059126 Enhancer 0.3 FANTOM5 0.7 +3.0 3032 0.1 FOXA1 RF00004-057 RNU2-58P TRIM37 lnc-PRR11-4 SKA2 lnc-TRIM37-1-001
GH17J059110 Enhancer 0.5 dbSUPER 0.4 +17.4 17426 2.7 ZNF157 NFXL1 PRDM6 ZNF362 ZNF384 PKNOX1 TRIM37 MIR301A MIR454 PRR11 SKA2 lnc-PRR11-4 ENSG00000224738 RNU2-58P RF00004-057 lnc-TRIM37-1-001
GH17J059123 Enhancer 0.4 FANTOM5 0.4 +6.3 6256 0.1 ZNF362 ZNF121 MIR301A SKA2 PRR11 SMG8 GDPD1 RNU2-58P RF00004-057 TRIM37 lnc-PRR11-4 lnc-TRIM37-1-001
GH17J059121 Enhancer 0.4 dbSUPER 0.4 +7.3 7315 0.6 BCLAF1 NFXL1 ZNF362 MIR301A SKA2 PRR11 SMG8 RNU2-58P RF00004-057 lnc-PRR11-4 TRIM37 lnc-TRIM37-1-001
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RNU2-58P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RNU2-58P Gene

Genomic Locations for RNU2-58P Gene
chr17:59,129,276-59,129,458
(GRCh38/hg38)
Size:
183 bases
Orientation:
Minus strand

Genomic View for RNU2-58P Gene

Genes around RNU2-58P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-58P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-58P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RNU2-58P Gene

Proteins for RNU2-58P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RNU2-58P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-58P Gene

Domains & Families for RNU2-58P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RNU2-58P Gene

Function for RNU2-58P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RNU2-58P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-58P Gene

Localization for RNU2-58P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-58P Gene

Pathways & Interactions for RNU2-58P Gene

PathCards logo

SuperPathways for RNU2-58P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RNU2-58P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RNU2-58P Gene

Drugs & Compounds for RNU2-58P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RNU2-58P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RNU2-58P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-58P Gene

No ASD Table

Relevant External Links for RNU2-58P Gene

GeneLoc Exon Structure for
RNU2-58P

Expression for RNU2-58P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNU2-58P Gene

mRNA expression in normal human tissues for RNU2-58P Gene
mRNA expression by GTEx for RNU2-58P Gene
genes like me logo Genes that share expression patterns with RNU2-58P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-58P Gene

Orthologs for RNU2-58P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-58P Gene

Organism Taxonomy Gene Similarity Type Details
Cow
(Bos Taurus)
 Mammalia U2 31
  • 60 (a)
 OneToOne
Chimpanzee
(Pan troglodytes)
 Mammalia U2 31
  • 48 (a)
 ManyToMany
Dog
(Canis familiaris)
 Mammalia U2 31
  • 45 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia U2 31
  • 39 (a)
 OneToOne
Zebrafish
(Danio rerio)
 Actinopterygii U2 31
  • 45 (a)
 ManyToMany
Species where no ortholog for RNU2-58P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for RNU2-58P Gene

ENSEMBL:
Gene Tree for RNU2-58P (if available)
TreeFam:
Gene Tree for RNU2-58P (if available)

Paralogs for RNU2-58P Gene

No data available for Paralogs for RNU2-58P Gene

Variants for RNU2-58P Gene

Additional Variant Information for RNU2-58P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-58P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-58P Gene

Disorders for RNU2-58P Gene

No disorders were found for RNU2-58P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-58P Gene

Publications for RNU2-58P Gene

No publications were found for RNU2-58P Gene.

No data available for Mastermind for RNU2-58P Gene

Products for RNU2-58P Gene

Sources for RNU2-58P Gene