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Aliases for RNU2-52P Gene

Subcategory (RNA class) for RNU2-52P Gene

snRNA

Aliases for RNU2-52P Gene

  • RNA, U2 Small Nuclear 52, Pseudogene 2 3 5

External Ids for RNU2-52P Gene

ORGUL Members for RNU2-52P Gene

Previous GeneCards Identifiers for RNU2-52P Gene

  • GC20P039654
  • GC00U934480

Summaries for RNU2-52P Gene

GeneCards Summary for RNU2-52P Gene

RNU2-52P (RNA, U2 Small Nuclear 52, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-52P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-52P Gene

Genomics for RNU2-52P Gene

GeneHancer (GH) Regulatory Elements for RNU2-52P Gene

Promoters and enhancers for RNU2-52P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I040990 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -32.8 -32820 2.4 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 IRF4 ZNF48 ARID2 ZNF143 TOP1 MAFB RNU2-52P LOC100128988 LOC105372621
GH20I041046 Enhancer 1.4 Ensembl ENCODE dbSUPER 13 +25.7 25695 7.6 HDGF PKNOX1 CLOCK ARNT FEZF1 NCOA2 TCF12 ZNF766 FOS ATF7 TOP1 RNU2-52P CHD6 LPIN3 GC20P041040 GC20P041111
GH20I041057 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 +34.2 34182 1.5 HDAC1 PKNOX1 INSM2 ELK1 EGR1 ZNF366 RCOR1 FOS ETV6 EGR2 TOP1 RNU2-52P GC20P041040 GC20P041111
GH20I041071 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.5 +48.5 48487 2.2 HDAC1 PKNOX1 ARNT ZNF335 TCF12 FOS BCLAF1 ZNF592 MEF2D SMARCA4 TOP1 RNU2-52P GC20P041040 GC20P041111
GH20I041086 Enhancer 1.1 ENCODE dbSUPER 11.6 +62.8 62803 1.3 PKNOX1 CLOCK ATF1 FEZF1 TCF12 ZNF766 GATA2 ATF7 NCOA1 MBD2 TOP1 RNU2-52P PLCG1 PLCG1-AS1 GC20P041111 GC20P041040
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-52P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-52P Gene

Genomic Locations for RNU2-52P Gene
chr20:41,024,205-41,024,394
(GRCh38/hg38)
Size:
190 bases
Orientation:
Plus strand

Genomic View for RNU2-52P Gene

Genes around RNU2-52P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-52P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-52P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-52P Gene

Proteins for RNU2-52P Gene

Post-translational modifications for RNU2-52P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-52P Gene

Domains & Families for RNU2-52P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-52P Gene

Function for RNU2-52P Gene

Phenotypes From GWAS Catalog for RNU2-52P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-52P Gene

Localization for RNU2-52P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-52P Gene

Pathways & Interactions for RNU2-52P Gene

SuperPathways for RNU2-52P Gene

No Data Available

Interacting Proteins for RNU2-52P Gene

Gene Ontology (GO) - Biological Process for RNU2-52P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-52P Gene

Drugs & Compounds for RNU2-52P Gene

No Compound Related Data Available

Transcripts for RNU2-52P Gene

mRNA/cDNA for RNU2-52P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-52P Gene

No ASD Table

Relevant External Links for RNU2-52P Gene

GeneLoc Exon Structure for
RNU2-52P
ECgene alternative splicing isoforms for
RNU2-52P

Expression for RNU2-52P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-52P Gene

genes like me logo Genes that share expression patterns with RNU2-52P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-52P Gene

Orthologs for RNU2-52P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-52P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia U2 34
  • 72 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia U2 34
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26105 34
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia U2 34 34
  • 64 (a)
OneToMany
chicken
(Gallus gallus)
Aves U2 34
  • 66 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii U2 34
  • 55 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea U2 34 34 34 34
  • 65 (a)
ManyToMany
Species where no ortholog for RNU2-52P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RNU2-52P Gene

ENSEMBL:
Gene Tree for RNU2-52P (if available)
TreeFam:
Gene Tree for RNU2-52P (if available)

Paralogs for RNU2-52P Gene

No data available for Paralogs for RNU2-52P Gene

Variants for RNU2-52P Gene

Additional Variant Information for RNU2-52P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-52P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-52P Gene

Disorders for RNU2-52P Gene

No disorders were found for RNU2-52P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-52P Gene

Publications for RNU2-52P Gene

No publications were found for RNU2-52P Gene.

Products for RNU2-52P Gene

Sources for RNU2-52P Gene

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