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Aliases for RNU2-50P Gene

Subcategory (RNA class) for RNU2-50P Gene

snRNA

Aliases for RNU2-50P Gene

  • RNA, U2 Small Nuclear 50, Pseudogene 2 3 5

External Ids for RNU2-50P Gene

ORGUL Members for RNU2-50P Gene

Previous GeneCards Identifiers for RNU2-50P Gene

  • GC00U934854

Summaries for RNU2-50P Gene

GeneCards Summary for RNU2-50P Gene

RNU2-50P (RNA, U2 Small Nuclear 50, Pseudogene) is a Pseudogene, and is affiliated with the snRNA class.

Additional gene information for RNU2-50P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNU2-50P Gene

Genomics for RNU2-50P Gene

GeneHancer (GH) Regulatory Elements for RNU2-50P Gene

Promoters and enhancers for RNU2-50P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I034341 Enhancer 1 Ensembl ENCODE dbSUPER 10.6 -61.2 -61156 5 FOXA2 NFIA RXRA ZIC2 YY1 OSR2 JUND ATF3 HNF4A SMAD4 NUDT2 MYORG C9orf24 RNU2-50P FAM219A DNAI1 IMPDH1P1 DCAF12 ENSG00000230729 RPP25L
GH09I034226 Enhancer 0.9 ENCODE 10.5 +56.1 56092 0.2 FOXA2 MLX ARID4B THRB RAD21 RARA YY1 SLC30A9 THAP11 MIXL1 GC09M034226 RPS8P9 IMPDH1P1 DCAF12 ENSG00000228352 RNU2-50P UBAP2 SNORD121B SNORD121A PIR43374
GH09I034150 Enhancer 0.9 ENCODE 9.9 +132.3 132272 0.2 HDAC1 ATF1 TAF9B TCF12 ZNF766 GATA2 FOS ATF7 CREM PHF21A UBAP1 ENSG00000228352 UBAP2 RNU2-50P SNORD121B PIR62533 GC09P034270 PIRC37 GC09P034099
GH09I034346 Enhancer 0.8 ENCODE dbSUPER 10.6 -64.8 -64759 1.2 SCRT1 RXRA MAX ZNF384 ZNF48 NR2F2 YY1 JUND SCRT2 HNF4G MYORG C9orf24 RNU2-50P DNAI1 FAM219A IMPDH1P1 DCAF12 ENSG00000230729 RPP25L KIF24
GH09I033880 Enhancer 0.8 Ensembl dbSUPER 9.6 +401.8 401769 0.2 CC2D1A ZFHX2 ZNF189 ZNF398 ZNF600 ZIC2 ZBTB5 EGR2 ZBTB17 UBE2R2 SNORD121B UBAP2 SNORD121A ENSG00000228352 RNU2-50P RNU4ATAC11P GC09M033934
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNU2-50P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNU2-50P Gene

Genomic Locations for RNU2-50P Gene
chr9:34,282,528-34,282,670
(GRCh38/hg38)
Size:
143 bases
Orientation:
Minus strand

Genomic View for RNU2-50P Gene

Genes around RNU2-50P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNU2-50P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNU2-50P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNU2-50P Gene

Proteins for RNU2-50P Gene

Post-translational modifications for RNU2-50P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNU2-50P Gene

Domains & Families for RNU2-50P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNU2-50P Gene

Function for RNU2-50P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNU2-50P Gene

Localization for RNU2-50P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNU2-50P Gene

Pathways & Interactions for RNU2-50P Gene

SuperPathways for RNU2-50P Gene

No Data Available

Interacting Proteins for RNU2-50P Gene

Gene Ontology (GO) - Biological Process for RNU2-50P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNU2-50P Gene

Drugs & Compounds for RNU2-50P Gene

No Compound Related Data Available

Transcripts for RNU2-50P Gene

mRNA/cDNA for RNU2-50P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNU2-50P Gene

No ASD Table

Relevant External Links for RNU2-50P Gene

GeneLoc Exon Structure for
RNU2-50P
ECgene alternative splicing isoforms for
RNU2-50P

Expression for RNU2-50P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNU2-50P Gene

genes like me logo Genes that share expression patterns with RNU2-50P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNU2-50P Gene

Orthologs for RNU2-50P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNU2-50P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U2 34
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia U2 34 34
  • 55 (a)
ManyToMany
Species where no ortholog for RNU2-50P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNU2-50P Gene

ENSEMBL:
Gene Tree for RNU2-50P (if available)
TreeFam:
Gene Tree for RNU2-50P (if available)

Paralogs for RNU2-50P Gene

No data available for Paralogs for RNU2-50P Gene

Variants for RNU2-50P Gene

Additional Variant Information for RNU2-50P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNU2-50P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNU2-50P Gene

Disorders for RNU2-50P Gene

No disorders were found for RNU2-50P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNU2-50P Gene

Publications for RNU2-50P Gene

No publications were found for RNU2-50P Gene.

Products for RNU2-50P Gene

Sources for RNU2-50P Gene

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